View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18818_low_1 (Length: 705)

Name: NF18818_low_1
Description: NF18818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18818_low_1
NF18818_low_1
[»] chr3 (16 HSPs)
chr3 (13-690)||(2504204-2504880)
chr3 (127-668)||(2641088-2641632)
chr3 (19-430)||(7331288-7331704)
chr3 (294-668)||(2648747-2649125)
chr3 (495-678)||(7331709-7331891)
chr3 (411-591)||(2485495-2485675)
chr3 (294-447)||(664475-664634)
chr3 (297-485)||(7339461-7339651)
chr3 (548-668)||(9564337-9564463)
chr3 (613-679)||(2495819-2495887)
chr3 (610-679)||(2634243-2634314)
chr3 (406-668)||(674847-675114)
chr3 (406-668)||(749443-749710)
chr3 (226-288)||(5031382-5031444)
chr3 (548-602)||(2447115-2447169)
chr3 (627-679)||(2447061-2447114)
[»] scaffold0019 (1 HSPs)
scaffold0019 (405-668)||(2494-2760)
[»] chr8 (1 HSPs)
chr8 (135-195)||(35439177-35439238)
[»] scaffold0325 (1 HSPs)
scaffold0325 (230-285)||(9845-9901)
[»] chr2 (1 HSPs)
chr2 (229-287)||(288848-288907)
[»] chr1 (3 HSPs)
chr1 (42-77)||(719490-719525)
chr1 (220-284)||(37187692-37187756)
chr1 (230-285)||(6505962-6506018)
[»] chr4 (2 HSPs)
chr4 (34-71)||(39142438-39142475)
chr4 (14-62)||(36467336-36467384)
[»] scaffold0341 (1 HSPs)
scaffold0341 (230-285)||(7641-7697)


Alignment Details
Target: chr3 (Bit Score: 634; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 13 - 690
Target Start/End: Complemental strand, 2504880 - 2504204
Alignment:
Q  13 aatataaatatcataaatagcccctaaattatatgaaatccgtcaatttaatccctaaaatgtatgaaagtctgtcaatttcgagactaaattaacagat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2504880 aatataaatatcataaatagcccctaaattatatgaaatccgtcaatttaatccctaaaatgtatgaaagtctgtcaatttcgagactaaattaacagat 2504781  T
Q  113 tttttatactcaatattgacatattttgtatttctttcttctattaatattattttcttcaaaacataatcaaaatagattttcattttctgcagaaaaa 212  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2504780 tttgtatacttaatattgacatattttgtatttctttcttctattaatattattttcttcaaaacatgatcaaaatagattttcattttctgcagaaaaa 2504681  T
Q  213 tgattttaaaaataaacttacacacaaacataactaaaacatgtaaaatgattttcaataatcttaaacaaacgggtactgaatatgtttttgcaaggaa 312  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2504680 tgattttaaatataaacttacacacaaacataactaaaacatgtaaaatgattttcaataatcttaaacaaacgggtactgaatatgtttttgcaaggaa 2504581  T
Q  313 aatacatccaaaagcatttgcaattaaaaaatcccttaattatccatttaactatgcttcacaatcacacaacctatccacattctatcaagacaaacaa 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2504580 aatacatccaaaagcatttgcaattaaaaaatcccttaattatccatttaactatgcttcacaatcacacaacctatccacattctatcaagacaaacaa 2504481  T
Q  413 cagacaataataaagtcagagacaagtttatcctacctattcaaaacatgtaggtttttcacctcctctagtttgacttcagaagaaataatcaaacaga 512  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2504480 cagacaataataaagtcagagacaagtttatcctatctatttaaaacatgtaggtttttcacctcctctagtttgacttcagaagaaataatcaaacaga 2504381  T
Q  513 acttaagaagttaaattaacctagaactattacccttttcacccccatcttcagcaaagctccacaccacaaaaagaacccgagcaattctgattgtgaa 612  Q
    |||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2504380 acttaagaagttaaattaccctataactactacccttttca-ccccatcttcagcaaagctccacaccacaaaaagaacccgagcaattctgattgtgaa 2504282  T
Q  613 taacccttctattgaaacaaacaaacacagccaacctgaaagagacatttcaactaatatgttataaagtgtattttg 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2504281 taacccttctattgaaacaaacaaacacagccaacctgaaagagacatttcaactaatatgttataaagtgtattttg 2504204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 127 - 668
Target Start/End: Original strand, 2641088 - 2641632
Alignment:
Q  127 attgacatattttgtatttctttcttctattaatattattttcttcaaaacataatcaaaatagattttcattttctgcagaaaaatgattttaaaaata 226  Q
    |||||||||| |||||||||||||||||| ||||||| ||| ||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  2641088 attgacatatcttgtatttctttcttctactaatattttttcctttaaaacctaatcaaaatatatttttattttctgcagaaaaatgattttaaaaata 2641187  T
Q  227 aacttacacacaaacataactaaaacatgtaaaatgattttcaa-taatcttaaacaaacgggtactgaatatgtttttgcaaggaaaataca---tcca 322  Q
    | ||||||||  ||||||||||||||||||||| ||||||| || ||||||||||||||||||||   |||||||||||||||||||||||||   ||||    
T  2641188 agcttacaca--aacataactaaaacatgtaaactgatttttaaataatcttaaacaaacgggtaacaaatatgtttttgcaaggaaaatacaacatcca 2641285  T
Q  323 aaagcattt-gcaattaaaaaatcccttaattatccatttaactatgcttcacaatcacacaacctatccacattctatcaagacaaacaacagacaata 421  Q
    || |||||| ||||||||| ||||||| |||||||||||| |||| |||||| ||||||||||||||||||  |||||||||| ||||||||||||||||    
T  2641286 aatgcattttgcaattaaagaatccctcaattatccatttcactacgcttcaaaatcacacaacctatccatgttctatcaaggcaaacaacagacaata 2641385  T
Q  422 ataaagtcagagacaagtttatcctacctattcaaaacatgtaggtttttcacctcctctagtttgacttcagaagaaataatcaaacagaacttaagaa 521  Q
    ||||||||||||||| |||||||||| |||||| |||||| ||||||||| |||   |||| ||||| | ||||||||||||||||||||||||||||||    
T  2641386 ataaagtcagagacaggtttatcctatctattccaaacatataggttttttaccg--tctaatttgattccagaagaaataatcaaacagaacttaagaa 2641483  T
Q  522 gttaaattaacctagaactattacccttttcacccccatcttcagcaaagctccacaccacaaaaagaacccgagcaattctgattgtgaataacccttc 621  Q
    ||||||| | |||| |||||||||||||||||  |||||||| |||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||    
T  2641484 gttaaataaccctataactattacccttttcaatcccatctttagcaaagctccagaccacaaaaagaacccaagcaattctgattttgaataacccttc 2641583  T
Q  622 tattgaaacaaacaaacacagccaacctg--aaagagacatttcaacta 668  Q
     ||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  2641584 cattgaaacaaacaaacacagccaacctgaaaaagagacattccaacta 2641632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 430
Target Start/End: Original strand, 7331288 - 7331704
Alignment:
Q  19 aatatcataaatagcccctaaattatatgaaatccgtcaatttaatccctaaaatgtatgaaagtctgtcaatttcgagactaaattaacagatttttta 118  Q
    ||||| |||||||||||||||||||||||||||  |||| ||||||||||||||| ||||||||| |||||||||| |||| ||||||||||||||| ||    
T  7331288 aatataataaatagcccctaaattatatgaaatttgtcactttaatccctaaaatatatgaaagtatgtcaatttcaagacaaaattaacagattttgta 7331387  T
Q  119 tactcaatattgacatattttgtatttcttt--cttctattaatattattttcttcaaaacataatcaaaatagattttcattttctgcagaaaaatgat 216  Q
    |||| || ||||||||||||||||||| |||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7331388 tacttaacattgacatattttgtatttttttttcttctattaatattattttcttcaaaacctaatcaaaatagattttcattttctgcagaaaaatgat 7331487  T
Q  217 tttaaaaataaacttacacacaaacataactaaaacatgtaaaatgattttcaataatcttaaacaaacgggtactgaatatgtttttgcaaggaaaat- 315  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||||||||||||     
T  7331488 tttaaaaataaacttacacacaaacataaataaaacatgtaaaatgatttttaataatcttaaaaaagcgggtactaaatatgtttttgcaaggaaaata 7331587  T
Q  316 --acatccaaaagca-tttgcaattaaaaaatcccttaattatccatttaactatgcttcacaatcacacaacctatccacattctatcaagacaaacaa 412  Q
      ||||||||| ||| ||||||||| || || |||| |||||||||||| |||||| |||||||||||||||| ||||||  |||||||||| ||||||     
T  7331588 caacatccaaatgcattttgcaattgaagaa-ccctcaattatccatttcactatgtttcacaatcacacaacatatccatgttctatcaagccaaacat 7331686  T
Q  413 cagacaataataaagtca 430  Q
    |  |||||||||||||||    
T  7331687 cgtacaataataaagtca 7331704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 294 - 668
Target Start/End: Original strand, 2648747 - 2649125
Alignment:
Q  294 aatatgtttttgcaaggaaaataca---tccaaaagcattt-gcaattaaaaaatcccttaattatccatttaactatgcttcacaatcacacaacctat 389  Q
    |||||||||||||||||||||||||   |||||| |||||| ||||||| | ||||||| |||||||||||| |||| |||||| |||||||||||||||    
T  2648747 aatatgtttttgcaaggaaaatacaacatccaaatgcattttgcaattatagaatccctcaattatccatttcactacgcttcaaaatcacacaacctat 2648846  T
Q  390 ccacattctatcaagacaaacaacagacaataataaagtcagagacaagtttatcctacctattcaaaacatgtaggtttttcacctcctctagtttgac 489  Q
    |||  |||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| ||||||||| |||   |||| ||| |     
T  2648847 ccatgttctatcaaggcaaacaacagacaataataaagtcagagacaggtttatcctatctattccaaacatataggttttttaccg--tctaatttaat 2648944  T
Q  490 ttcagaagaaataatcaaacagaacttaagaagttaaattaacctagaactattacccttttcacccccatcttcagcaaagctccacaccacaaaaaga 589  Q
    | ||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||  |||||||| |||||||||||| ||||||||||||    
T  2648945 tccagaagaaataatcaaacagaacttaagaagttaaataaccctataactattacccttttcaatcccatctttagcaaagctccagaccacaaaaaga 2649044  T
Q  590 acccgagcaattctgattgtgaataacccttctattgaaacaaacaaacacagccaacctg--aaagagacatttcaacta 668  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  2649045 acccgagcaattctgattttgaataacccttccattgaaacaaacaaacacagccaacctgaaaaagagacattccaacta 2649125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 495 - 678
Target Start/End: Original strand, 7331709 - 7331891
Alignment:
Q  495 aagaaataatcaaacagaacttaagaagttaaattaacctagaactattacccttttcacccccatcttcagcaaagctccacaccacaaaaagaacccg 594  Q
    |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||  |||||| |||||||||||||||||    
T  7331709 aagaaataatcaaacagaacttcagaagttaaataaccctagaactattacccttttcacccc-atcttcagca--gctccagaccacaaaaagaacccg 7331805  T
Q  595 agcaattctgattgtgaataacccttctattgaaacaaacaaacacagccaacctg--aaagagacatttcaactaatatgttata 678  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||  ||||||||||| |||||| || ||||||    
T  7331806 agcaattctgattgtgaataactattctattgaaacaaacaaacacagccaacctgaaaaagagacattccaactattaagttata 7331891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 411 - 591
Target Start/End: Complemental strand, 2485675 - 2485495
Alignment:
Q  411 aacagacaataataaagtcagagacaagtttatcctacctattcaaaacatgtaggtttttcacctcctctagtttgacttcagaagaaataatcaaaca 510  Q
    |||| ||||||| |||||  ||||||||||| |||||  ||| || ||||| ||| ||||||| ||| |||||||||||| || |||||||||| ||||     
T  2485675 aacatacaataaaaaagtgggagacaagtttttcctaattatacagaacatatagttttttcatctcatctagtttgactccacaagaaataattaaact 2485576  T
Q  511 gaacttaagaagttaaattaacctagaactatta-cccttttcacccccatcttcagcaaagctccacaccacaaaaagaac 591  Q
    ||||||| ||| ||  |  |  |||||||||||| ||||||||||| ||||||||||||| |||||| ||||||||| ||||    
T  2485575 gaacttaggaa-ttcgacaacactagaactattaccccttttcaccaccatcttcagcaaggctccagaccacaaaatgaac 2485495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 294 - 447
Target Start/End: Original strand, 664475 - 664634
Alignment:
Q  294 aatatgtttttgcaaggaaaataca---tccaaaagcattt-gcaattaaaaaa--tcccttaattatccatttaactatgcttcacaatcacacaacct 387  Q
    ||||| |||||||||| ||||||||   |||||| |||||| ||||||||||||  |||   ||||||| |||||| | ||||||| |||| || ||| |    
T  664475 aatatatttttgcaagaaaaatacaacatccaaatgcattttgcaattaaaaaaaatcctcaaattatcaatttaaatttgcttcataatcccataactt 664574  T
Q  388 atccacattctatcaagacaaacaacagacaataataaagtcagagacaagtttatccta 447  Q
    ||| |  ||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  664575 atctaggttccatcaagaaaaacaacatacaataataaagtcagagagaagtttatccta 664634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 297 - 485
Target Start/End: Original strand, 7339461 - 7339651
Alignment:
Q  297 atgtttttgcaaggaaaataca---tccaaaagcattt-gcaattaaaaaatccctt-aattatccatttaactatgcttcacaatcacacaacctatcc 391  Q
    ||||||||||||| ||||||||   |||||| |||||| ||| |||||||  ||||  ||| |||||||| | || |||||||||||||||||||||| |    
T  7339461 atgtttttgcaagaaaaatacaacatccaaatgcattttgcagttaaaaa--ccctccaatgatccatttgaataggcttcacaatcacacaacctat-c 7339557  T
Q  392 acattctatcaagacaaacaacagacaataataaagtcagagacaagtttatcctacctattcaaaacatgtaggttttt-cacctcctctagtt 485  Q
    || ||| ||||||||| |||||| ||||||||||||| ||| ||||||||||  || | ||||| ||||| || |||||| |||||| |||||||    
T  7339558 accttccatcaagacatacaacatacaataataaagt-agaaacaagtttatggtatccattcagaacatatatgtttttacacctcatctagtt 7339651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 548 - 668
Target Start/End: Original strand, 9564337 - 9564463
Alignment:
Q  548 ttttcacccccatcttcagcaaagctccacaccacaaaaagaacccgagcaattctga----ttgtgaataacccttctattgaaacaaacaaacacagc 643  Q
    |||||||| |||||||||||||  ||||| ||||||||| |||||  |||||||| |     | |||||||||||||||| |||||  |||||||||  |    
T  9564337 ttttcaccgccatcttcagcaatactccagaccacaaaatgaacctaagcaattcagccagctagtgaataacccttctaatgaaatgaacaaacacgac 9564436  T
Q  644 caacctg--aaagagacatttcaacta 668  Q
    |||||||  ||||||||||||||||||    
T  9564437 caacctgaaaaagagacatttcaacta 9564463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 613 - 679
Target Start/End: Complemental strand, 2495887 - 2495819
Alignment:
Q  613 taacccttctattgaaacaaacaaacacagccaacctg--aaagagacatttcaactaatatgttataa 679  Q
    |||||||||||||||||  |||||||||| ||||||||  ||||||||||||||||||  |||||||||    
T  2495887 taacccttctattgaaaggaacaaacacaaccaacctgaaaaagagacatttcaactatgatgttataa 2495819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 610 - 679
Target Start/End: Complemental strand, 2634314 - 2634243
Alignment:
Q  610 gaataacccttctattgaaacaaacaaacacagccaacctg--aaagagacatttcaactaatatgttataa 679  Q
    ||||||||||||||||||||| |||||||||| ||| ||||  |||||||||||| |||||  |||||||||    
T  2634314 gaataacccttctattgaaacgaacaaacacaaccagcctgaaaaagagacatttgaactatgatgttataa 2634243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 406 - 668
Target Start/End: Original strand, 674847 - 675114
Alignment:
Q  406 caaacaacagacaataataaagtcagagacaagtttatcctacctattcaaaacatgtaggtttttcacctcctctagtttgacttcagaagaaataatc 505  Q
    ||||||||| | |||||||||  |||||||||||||| |||  ||||| | ||| | ||| ||||||||| | |||||||| ||| || || ||||||||    
T  674847 caaacaacatataataataaaaccagagacaagtttagcctgtctattaagaacctatagttttttcaccccatctagttttactacataataaataatc 674946  T
Q  506 aaacagaacttaagaagttaaattaacctagaactatta-cccttttcacccccatcttcagcaaagctccacaccacaaaaagaacccgagcaatt--- 601  Q
    |||  |||||||  || ||  |    |||| |||||| | || |||| ||  ||||||||||||| |||||| |||| |||| |||||  |||||||       
T  674947 aaaatgaactta--aaattccacggccctaaaactataatcctttttaacagccatcttcagcaacgctccagaccagaaaatgaacctaagcaattaag 675044  T
Q  602 -ctgattgtgaataacccttctattgaaacaaacaaacacagccaacctg--aaagagacatttcaacta 668  Q
     | | | |||||| |||||||||||||||  |||||||||  ||||||||  ||||||||||||||||||    
T  675045 ccagctagtgaattacccttctattgaaatgaacaaacacgaccaacctgaaaaagagacatttcaacta 675114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 406 - 668
Target Start/End: Original strand, 749443 - 749710
Alignment:
Q  406 caaacaacagacaataataaagtcagagacaagtttatcctacctattcaaaacatgtaggtttttcacctcctctagtttgacttcagaagaaataatc 505  Q
    ||||||||| | |||||||||  |||||||||||||| |||  ||||| | ||| | ||| ||||||||| | |||||||| ||| || || ||||||||    
T  749443 caaacaacatataataataaaaccagagacaagtttagcctgtctattaagaacctatagttttttcaccccatctagttttactacataataaataatc 749542  T
Q  506 aaacagaacttaagaagttaaattaacctagaactatta-cccttttcacccccatcttcagcaaagctccacaccacaaaaagaacccgagcaatt--- 601  Q
    |||  |||||||  || ||  |    |||| |||||| | || |||| ||  ||||||||||||| |||||| |||| |||| |||||  |||||||       
T  749543 aaaatgaactta--aaattccacggccctaaaactataatcctttttaacagccatcttcagcaacgctccagaccagaaaatgaacctaagcaattaag 749640  T
Q  602 -ctgattgtgaataacccttctattgaaacaaacaaacacagccaacctg--aaagagacatttcaacta 668  Q
     | | | |||||| |||||||||||||||  |||||||||  ||||||||  ||||||||||||||||||    
T  749641 ccagctagtgaattacccttctattgaaatgaacaaacacgaccaacctgaaaaagagacatttcaacta 749710  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 5031382 - 5031444
Alignment:
Q  226 aaacttacacacaaacataactaaaacatgtaaaatgattttcaataatcttaaacaaacggg 288  Q
    |||||| ||||||||||||||||||||||  |||||||||||  ||||||||| || ||||||    
T  5031382 aaacttgcacacaaacataactaaaacatcaaaaatgattttttataatcttatactaacggg 5031444  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 548 - 602
Target Start/End: Complemental strand, 2447169 - 2447115
Alignment:
Q  548 ttttcacccccatcttcagcaaagctccacaccacaaaaagaacccgagcaattc 602  Q
    |||||||| |||||||||||||||||||| |||| |||| |||||  ||||||||    
T  2447169 ttttcaccgccatcttcagcaaagctccagaccataaaatgaacctaagcaattc 2447115  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 679
Target Start/End: Complemental strand, 2447114 - 2447061
Alignment:
Q  627 aaacaaacaaacacagccaacctg-aaagagacatttcaactaatatgttataa 679  Q
    ||||||||||||||| |||||||| |||||| |||||||||||  |||||||||    
T  2447114 aaacaaacaaacacaaccaacctgaaaagaggcatttcaactatgatgttataa 2447061  T

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Target: scaffold0019 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 405 - 668
Target Start/End: Complemental strand, 2760 - 2494
Alignment:
Q  405 acaaacaacagacaataataaagtcagagacaagtttatcctacctattcaaaacatgtaggtttttcacctcctctagtttgacttcagaagaaataat 504  Q
    ||||||||||   |||||||||| ||||||||| |||| |||| ||||||| |||| ||   ||||||||||| || ||||| ||  || || |||||||    
T  2760 acaaacaacatttaataataaagccagagacaaatttagcctatctattcagaacaagt---tttttcacctcatcaagttttacaccataataaataat 2664  T
Q  505 caaacagaacttaagaagttaaattaacctagaactattaccctttt-cacccccatcttcagcaaagctccacaccacaaaaagaacccgagcaattct 603  Q
    ||||  ||||||| ||| ||  |  | |||| ||||||||||||||| |||| |||| |||||||| |||||| |||   ||| |||||  ||||||||     
T  2663 caaaatgaacttaggaa-ttccacaaccctaaaactattaccctttttcaccgccatattcagcaacgctccagacccacaaatgaacctaagcaattca 2565  T
Q  604 ga----ttgtgaataacccttctattgaaacaaacaaacacagccaacctg--aaagagacatttcaacta 668  Q
    |     | | ||||||||||||||||||||| |||||||||| ||||||||  ||||||||||||||||||    
T  2564 gccagctagagaataacccttctattgaaacgaacaaacacaaccaacctgaaaaagagacatttcaacta 2494  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 35439238 - 35439177
Alignment:
Q  135 attttgtatttctttcttctattaatatta-ttttcttcaaaacataatcaaaatagatttt 195  Q
    ||||||||||||| ||||||||||| | || ||||||||||||  |||||||||||||||||    
T  35439238 attttgtatttctctcttctattaaaactaattttcttcaaaagttaatcaaaatagatttt 35439177  T

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Target: scaffold0325 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 9901 - 9845
Alignment:
Q  230 ttacacacaaacataactaaaacatgtaaaatgattttcaata-atcttaaacaaac 285  Q
    ||||||||||||| |||||||||||| ||||||||||| || | |||||||||||||    
T  9901 ttacacacaaacacaactaaaacatgaaaaatgatttttaaaatatcttaaacaaac 9845  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 288907 - 288848
Alignment:
Q  229 cttacacacaaacataactaaaacatgtaaaatga-ttttcaataatcttaaacaaacgg 287  Q
    ||||||||||||||||||||||| ||  ||||||| ||||||| |||||||||| |||||    
T  288907 cttacacacaaacataactaaaagatcaaaaatgatttttcaaaaatcttaaactaacgg 288848  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 719525 - 719490
Alignment:
Q  42 tatatgaaatccgtcaatttaatccctaaaatgtat 77  Q
    ||||||||||||| ||||||||||||||||||||||    
T  719525 tatatgaaatccgacaatttaatccctaaaatgtat 719490  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 37187692 - 37187756
Alignment:
Q  220 aaaaataaacttacacacaaacataactaaaacatgtaaaatg-attttcaataatcttaaacaaa 284  Q
    ||||| |||||||||||||| ||||||||||||| | |||||| ||||| ||| ||||||||||||    
T  37187692 aaaaagaaacttacacacaatcataactaaaacaag-aaaatgaatttttaattatcttaaacaaa 37187756  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 6506018 - 6505962
Alignment:
Q  230 ttacacacaaacataactaaaacatgtaaaatga-ttttcaataatcttaaacaaac 285  Q
    |||||||||||||||||||||||||  ||||| | ||||  ||||||||||||||||    
T  6506018 ttacacacaaacataactaaaacataaaaaataattttttgataatcttaaacaaac 6505962  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 39142475 - 39142438
Alignment:
Q  34 ccctaaattatatgaaatccgtcaatttaatccctaaa 71  Q
    |||||||  |||||||||||||||||||||||||||||    
T  39142475 ccctaaagcatatgaaatccgtcaatttaatccctaaa 39142438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 36467336 - 36467384
Alignment:
Q  14 atataaatatcataaatagcccctaaattatatgaaatccgtcaattta 62  Q
    |||||||||| |||| ||| ||||||| ||||| |||||||||||||||    
T  36467336 atataaatataataactagtccctaaagtatataaaatccgtcaattta 36467384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 7697 - 7641
Alignment:
Q  230 ttacacacaaacataactaaaacatgtaaaatga-ttttcaataatcttaaacaaac 285  Q
    |||||||||||||||||||||||||  ||||| | ||||  ||||||||||||||||    
T  7697 ttacacacaaacataactaaaacataaaaaataattttttgataatcttaaacaaac 7641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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