View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18818_low_14 (Length: 234)

Name: NF18818_low_14
Description: NF18818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18818_low_14
NF18818_low_14
[»] chr8 (1 HSPs)
chr8 (6-234)||(23134902-23135127)
[»] chr3 (1 HSPs)
chr3 (6-234)||(11894753-11894978)
[»] chr1 (1 HSPs)
chr1 (6-234)||(20282454-20282679)
[»] chr2 (1 HSPs)
chr2 (10-234)||(14656003-14656230)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 23135127 - 23134902
Alignment:
Q  6 acatcatcataaatccccaaaaaaccgttacaacaaaaaataacaggttcaatgcccttaatcatctatcaacaagaaacaaaactggcataccccttcc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  23135127 acatcatcataaatccccaaaaaaccgttacaacaaaaaataacaggttcaatgcccttaatcatctaacaactagaaacaaaactggcctaccccttcc 23135028  T
Q  106 aaataaccagtcacgcaccactactgtccaaacacgccgcatccttcaagtgcccaaagacacgaaacgtcgcagacatgacgccatggccactgatgaa 205  Q
    |||||||||||||||| ||| |||||||| ||   |  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23135027 aaataaccagtcacgccccattactgtccgaa---gatgcatccttcaagtgcccaaagacacgaaacgtcgcagacatgacaccatggccactgatgaa 23134931  T
Q  206 ccagttttttacttctcccaactcaaccc 234  Q
    ||||| ||| ||||||||||| |||||||    
T  23134930 ccagtctttgacttctcccaagtcaaccc 23134902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 11894753 - 11894978
Alignment:
Q  6 acatcatcataaatccccaaaaaaccgttacaacaaaaaataacaggttcaatgcccttaatcatctatcaacaagaaacaaaactggcataccccttcc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  11894753 acatcatcataaatccccaaaaaaccgttacaacaaaaaataacaggttcaatgcccttaatcatctaacaactagaaacaaaactggcctaccccttcc 11894852  T
Q  106 aaataaccagtcacgcaccactactgtccaaacacgccgcatccttcaagtgcccaaagacacgaaacgtcgcagacatgacgccatggccactgatgaa 205  Q
    |||||||||||||||| ||| |||||||| ||   |  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11894853 aaataaccagtcacgccccattactgtccgaa---gatgcatccttcaagtgcccaaagacacgaaacgtcgcagacatgacaccatggccactgatgaa 11894949  T
Q  206 ccagttttttacttctcccaactcaaccc 234  Q
    ||||| ||| ||||||||||| |||||||    
T  11894950 ccagtctttgacttctcccaagtcaaccc 11894978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 20282454 - 20282679
Alignment:
Q  6 acatcatcataaatccccaaaaaaccgttacaacaaaaaataacaggttcaatgcccttaatcatctatcaacaagaaacaaaactggcataccccttcc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  20282454 acatcatcataaatccccaaaaaaccgttacaacaaaaaataacaggttcaatgcccttaatcatctaacaactagaaacaaaactggcctaccccttcc 20282553  T
Q  106 aaataaccagtcacgcaccactactgtccaaacacgccgcatccttcaagtgcccaaagacacgaaacgtcgcagacatgacgccatggccactgatgaa 205  Q
    |||||||||||||||| ||| || |||||| |   |  |||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||    
T  20282554 aaataaccagtcacgccccattattgtccaga---gatgcatccttcaagtgcccaaagacacgaaacatcgtagacatgacaccatggccactgatgaa 20282650  T
Q  206 ccagttttttacttctcccaactcaaccc 234  Q
    ||||| ||| ||||||||||| |||||||    
T  20282651 ccagtctttgacttctcccaagtcaaccc 20282679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 14656230 - 14656003
Alignment:
Q  10 catcataaatccccaaaaaaccgttacaacaaaaaataacaggttcaatgcccttaatcatctatcaacaagaaacaaaactggcataccccttccaaat 109  Q
    |||||||||||| |||||||||||||||  ||||| |||||  ||||||||||||||   |||| | |  ||||||||| |||||  || |  ||| ||     
T  14656230 catcataaatccacaaaaaaccgttacataaaaaattaacaaattcaatgcccttaacagtctaactattagaaacaaagctggcccactcaatcctaac 14656131  T
Q  110 aaccagtcacgcac------cactactgtccaaacacgccgcatccttcaagtgcccaaagacacgaaacgtcgcagacatgacgccatggccactgatg 203  Q
    |||||| ||||| |      |||||||| ||||||||||   | || |||||| || |||||||| ||||||||||| ||||||| |||  |||||||||    
T  14656130 aaccagccacgcccttaccccactactgaccaaacacgc---acccatcaagttcctaaagacacaaaacgtcgcaggcatgacgacatcaccactgatg 14656034  T
Q  204 aaccagttttttacttctcccaactcaaccc 234  Q
    | ||  ||||| ||||||||||  |||||||    
T  14656033 agccgatttttgacttctcccatgtcaaccc 14656003  T

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