View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18818_low_16 (Length: 227)
Name: NF18818_low_16
Description: NF18818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18818_low_16 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 23134650 - 23134873
Alignment:
| Q |
1 |
tcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttgctcatttggaatggagggggtggcgagcatgaaacttgaat |
100 |
Q |
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| T |
23134650 |
tcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgg---gggtggcgagcatgaaacttgaat |
23134746 |
T |
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| Q |
101 |
tagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcattagtgatagtttgtttatttggtaattgttgggttgtttt |
200 |
Q |
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| T |
23134747 |
tagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggttgtttt |
23134846 |
T |
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| Q |
201 |
tggcacgtgcggttcaggggtggtctt |
227 |
Q |
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| T |
23134847 |
tggcacgtgcggttcaggtgtggtctt |
23134873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 20282931 - 20282708
Alignment:
| Q |
1 |
tcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttgctcatttggaatggagggggtggcgagcatgaaacttgaat |
100 |
Q |
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| T |
20282931 |
tcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgg---gggtggcgagcatgaaacttgaat |
20282835 |
T |
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| Q |
101 |
tagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcattagtgatagtttgtttatttggtaattgttgggttgtttt |
200 |
Q |
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| T |
20282834 |
tagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggttgtttt |
20282735 |
T |
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| Q |
201 |
tggcacgtgcggttcaggggtggtctt |
227 |
Q |
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| T |
20282734 |
tggcacgtgcggttcaggtgtggtctt |
20282708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11895230 - 11895007
Alignment:
| Q |
1 |
tcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttgctcatttggaatggagggggtggcgagcatgaaacttgaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| |
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| T |
11895230 |
tcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttagaatgg---gggtggcgagcatgaaacttgaat |
11895134 |
T |
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| Q |
101 |
tagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcattagtgatagtttgtttatttggtaattgttgggttgtttt |
200 |
Q |
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| T |
11895133 |
tcgggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggttgtttt |
11895034 |
T |
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| Q |
201 |
tggcacgtgcggttcaggggtggtctt |
227 |
Q |
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| T |
11895033 |
tggcacgtgcggttcaggtgtggtctt |
11895007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 14655859 - 14655970
Alignment:
| Q |
112 |
tcaggtgttggattattgactaaggtgggatcattttcttgaacttcattagtgatagtttgtttatttggtaattgttgggttgtttttggcacgtgcg |
211 |
Q |
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| T |
14655859 |
tcaggtgtttgattattgataacaatgggaacatttttttgagcttcattagtggtagtttgtttatttggtaattgttgagttgttttaggcacgtgcg |
14655958 |
T |
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| Q |
212 |
gttcaggggtgg |
223 |
Q |
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| T |
14655959 |
gttcaggagtgg |
14655970 |
T |
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