View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18818_low_7 (Length: 358)

Name: NF18818_low_7
Description: NF18818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18818_low_7
NF18818_low_7
[»] chr5 (9 HSPs)
chr5 (16-200)||(22648531-22648706)
chr5 (268-342)||(22648774-22648848)
chr5 (148-195)||(26718866-26718913)
chr5 (148-195)||(26988610-26988657)
chr5 (148-198)||(27530627-27530677)
chr5 (148-196)||(35080689-35080737)
chr5 (271-339)||(36868917-36868985)
chr5 (148-196)||(10407596-10407644)
chr5 (271-339)||(14318426-14318494)
[»] chr6 (3 HSPs)
chr6 (268-339)||(6159432-6159503)
chr6 (148-198)||(20611924-20611974)
chr6 (151-195)||(2477508-2477552)
[»] chr1 (4 HSPs)
chr1 (150-196)||(45758642-45758688)
chr1 (275-339)||(38547083-38547147)
chr1 (148-195)||(39134639-39134686)
chr1 (151-195)||(6221823-6221867)
[»] chr2 (6 HSPs)
chr2 (151-196)||(12133959-12134004)
chr2 (154-198)||(7742055-7742099)
chr2 (148-195)||(16227286-16227333)
chr2 (150-195)||(11952511-11952556)
chr2 (271-339)||(21665744-21665812)
chr2 (271-339)||(38400788-38400856)
[»] chr4 (4 HSPs)
chr4 (148-197)||(40217369-40217418)
chr4 (148-197)||(51691839-51691888)
chr4 (150-198)||(4167843-4167891)
chr4 (151-195)||(27112170-27112214)
[»] chr8 (7 HSPs)
chr8 (271-339)||(11290175-11290243)
chr8 (148-195)||(39332328-39332375)
chr8 (148-194)||(38009071-38009117)
chr8 (294-335)||(8646201-8646242)
chr8 (150-195)||(11290325-11290370)
chr8 (294-339)||(15167482-15167527)
chr8 (294-338)||(15078750-15078794)
[»] chr7 (5 HSPs)
chr7 (150-197)||(12981458-12981505)
chr7 (145-196)||(23020401-23020451)
chr7 (148-198)||(12419414-12419464)
chr7 (148-197)||(2611180-2611229)
chr7 (150-195)||(38971388-38971433)
[»] scaffold0007 (1 HSPs)
scaffold0007 (148-198)||(230781-230831)
[»] scaffold1590 (1 HSPs)
scaffold1590 (271-339)||(302-370)
[»] scaffold1320 (1 HSPs)
scaffold1320 (294-338)||(1346-1390)
[»] scaffold0097 (1 HSPs)
scaffold0097 (271-339)||(38916-38984)
[»] chr3 (1 HSPs)
chr3 (151-195)||(23641240-23641284)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 22648531 - 22648706
Alignment:
Q  16 catattgcatgtccctttaaacagcatgtgagttggaaacttaatcttttatatggatttgaggtccctagacaaatatatgtatgacatgtgaatctta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22648531 catattgcatgtccctttaaacagcatgtgagttggaaacttaatcttttatatggatttgaggtccctagacaaatatatgtatgacatgtgaatctta 22648630  T
Q  116 ttgcaccaagcatatatatatggatgtatcagagggccgttcctacgaatccagagactcggttctgtaagtgaaaagaggcctg 200  Q
    |||||||||||      |||||||||||||  |||| ||||||||||||||| ||||||| | |||||||||||||||| |||||    
T  22648631 ttgcaccaagc------atatggatgtatc--agggtcgttcctacgaatccggagactc-gctctgtaagtgaaaagaagcctg 22648706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 22648774 - 22648848
Alignment:
Q  268 aatgtgtcgtatatatgtggcacattcaaatgtgacaatcactatcgtataaataagaaacctcaaaccaccttc 342  Q
    ||||||||||||||||||||||||| |||| |||||||||||||  |||||||||||||||||||||||||||||    
T  22648774 aatgtgtcgtatatatgtggcacatccaaaggtgacaatcactactgtataaataagaaacctcaaaccaccttc 22648848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 26718866 - 26718913
Alignment:
Q  148 agggccgttcctacgaatccagagactcggttctgtaagtgaaaagag 195  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  26718866 agggccgttcctatgaatccggaggctcggttctgtaagtgaaaagag 26718913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 26988610 - 26988657
Alignment:
Q  148 agggccgttcctacgaatccagagactcggttctgtaagtgaaaagag 195  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  26988610 agggccgttcctatgaatccggaggctcggttctgtaagtgaaaagag 26988657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 27530677 - 27530627
Alignment:
Q  148 agggccgttcctacgaatccagagactcggttctgtaagtgaaaagaggcc 198  Q
    ||||||||||||||||||  |||| ||||||||| ||||||||||||||||    
T  27530677 agggccgttcctacgaatttagaggctcggttctataagtgaaaagaggcc 27530627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 35080689 - 35080737
Alignment:
Q  148 agggccgttcctacgaatccagagactcggttctgtaagtgaaaagagg 196  Q
    ||||||||||||||||||| |||| ||||  ||||||||||||||||||    
T  35080689 agggccgttcctacgaatctagaggctcgactctgtaagtgaaaagagg 35080737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 36868917 - 36868985
Alignment:
Q  271 gtgtcgtatatatgtggcacattcaaatgtgacaatcactatcgtataaataagaaacctcaaaccacc 339  Q
    ||||||||||||||||| |||  ||||||||| |||||||| |||||| || || || |||||||||||    
T  36868917 gtgtcgtatatatgtggtacacccaaatgtgaaaatcactaccgtatacatgaggaatctcaaaccacc 36868985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 10407644 - 10407596
Alignment:
Q  148 agggccgttcctacgaatccagagactcggttctgtaagtgaaaagagg 196  Q
    |||| |||||||||||||| ||||  |||||||| ||||||||||||||    
T  10407644 agggtcgttcctacgaatctagaggttcggttctataagtgaaaagagg 10407596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 14318426 - 14318494
Alignment:
Q  271 gtgtcgtatatatgtggcacattcaaatgtgacaatcactatcgtataaataagaaacctcaaaccacc 339  Q
    ||||||||||||||||  |||| ||||  ||| |||||||| |||||| || || ||||||||||||||    
T  14318426 gtgtcgtatatatgtgatacatccaaaaatgaaaatcactaccgtatacatgaggaacctcaaaccacc 14318494  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 6159503 - 6159432
Alignment:
Q  268 aatgtgtcgtatatatgtggcacattcaaatgtgacaatcactatcgtataaataagaaacctcaaaccacc 339  Q
    ||||||||||||||||| || ||||||||| |||  |||||||| |||||| ||||| ||||||||||||||    
T  6159503 aatgtgtcgtatatatgcggtacattcaaaggtggaaatcactaccgtatatataaggaacctcaaaccacc 6159432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 20611974 - 20611924
Alignment:
Q  148 agggccgttcctacgaatccagagactcggttctgtaagtgaaaagaggcc 198  Q
    |||| ||||||||||||| | ||| ||||| ||||||||||||||||||||    
T  20611974 agggtcgttcctacgaattcggaggctcggctctgtaagtgaaaagaggcc 20611924  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 2477508 - 2477552
Alignment:
Q  151 gccgttcctacgaatccagagactcggttctgtaagtgaaaagag 195  Q
    ||||||||||| ||||  ||| |||||||||||||||||||||||    
T  2477508 gccgttcctacaaatctggaggctcggttctgtaagtgaaaagag 2477552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 45758688 - 45758642
Alignment:
Q  150 ggccgttcctacgaatccagagactcggttctgtaagtgaaaagagg 196  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  45758688 ggccgttcctacgaatccagaggctcggctctgtaagtgaaaagagg 45758642  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 38547083 - 38547147
Alignment:
Q  275 cgtatatatgtggcacattcaaatgtgacaatcactatcgtataaataagaaacctcaaaccacc 339  Q
    ||||||||||||| |||  ||||||||| |||||||||| |||| || || ||||||||||||||    
T  38547083 cgtatatatgtggtacacccaaatgtgaaaatcactatcatatacatgaggaacctcaaaccacc 38547147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 39134639 - 39134686
Alignment:
Q  148 agggccgttcctacgaatccagagactcggttctgtaagtgaaaagag 195  Q
    |||||||||||||||||||| ||| ||||| || ||||||||||||||    
T  39134639 agggccgttcctacgaatccggaggctcggctccgtaagtgaaaagag 39134686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 6221867 - 6221823
Alignment:
Q  151 gccgttcctacgaatccagagactcggttctgtaagtgaaaagag 195  Q
    |||||| |||||||||  ||||||||||||||||| |||||||||    
T  6221867 gccgtttctacgaatctggagactcggttctgtaaatgaaaagag 6221823  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 12133959 - 12134004
Alignment:
Q  151 gccgttcctacgaatccagagactcggttctgtaagtgaaaagagg 196  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  12133959 gccgtacctacgaatccagaggctcggttctgtaagtgaaaagagg 12134004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 7742055 - 7742099
Alignment:
Q  154 gttcctacgaatccagagactcggttctgtaagtgaaaagaggcc 198  Q
    |||||||||||||| |||  |||||||||||||||||||||||||    
T  7742055 gttcctacgaatccggaggttcggttctgtaagtgaaaagaggcc 7742099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 16227286 - 16227333
Alignment:
Q  148 agggccgttcctacgaatccagagactcggttctgtaagtgaaaagag 195  Q
    |||||||||||||||||| | ||| ||| |||||||||||||||||||    
T  16227286 agggccgttcctacgaattcggaggctcagttctgtaagtgaaaagag 16227333  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 11952511 - 11952556
Alignment:
Q  150 ggccgttcctacgaatccagagactcggttctgtaagtgaaaagag 195  Q
    |||||||||||||||||   || |||||||||||||||||||||||    
T  11952511 ggccgttcctacgaatctgaaggctcggttctgtaagtgaaaagag 11952556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 21665744 - 21665812
Alignment:
Q  271 gtgtcgtatatatgtggcacattcaaatgtgacaatcactatcgtataaataagaaacctcaaaccacc 339  Q
    ||||||||||||||||  ||||  |||||||| |||||||| |||||| || || |||| |||||||||    
T  21665744 gtgtcgtatatatgtgatacatcaaaatgtgaaaatcactaccgtatacatgaggaaccacaaaccacc 21665812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 38400856 - 38400788
Alignment:
Q  271 gtgtcgtatatatgtggcacattcaaatgtgacaatcactatcgtataaataagaaacctcaaaccacc 339  Q
    ||||| |||||||| |  ||||||||| |||| |||||||| |||||| || || ||||||||||||||    
T  38400856 gtgtcatatatatgcgatacattcaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 38400788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 40217418 - 40217369
Alignment:
Q  148 agggccgttcctacgaatccagagactcggttctgtaagtgaaaagaggc 197  Q
    |||||| ||||||||||| ||||| ||||||| |||||||||||||||||    
T  40217418 agggccattcctacgaattcagaggctcggttttgtaagtgaaaagaggc 40217369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 51691839 - 51691888
Alignment:
Q  148 agggccgttcctacgaatccagagactcggttctgtaagtgaaaagaggc 197  Q
    |||||||||||||||||||| ||| ||||| |||| ||||||||||||||    
T  51691839 agggccgttcctacgaatccggaggctcggctctgcaagtgaaaagaggc 51691888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 4167843 - 4167891
Alignment:
Q  150 ggccgttcctacgaatccagagactcggttctgtaagtgaaaagaggcc 198  Q
    |||||||| ||||||||| ||| |||| || ||||||||||||||||||    
T  4167843 ggccgttcgtacgaatccggaggctcgattttgtaagtgaaaagaggcc 4167891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 27112214 - 27112170
Alignment:
Q  151 gccgttcctacgaatccagagactcggttctgtaagtgaaaagag 195  Q
    ||||||||||| ||||  ||| |||||||||||||||||||||||    
T  27112214 gccgttcctacaaatctggaggctcggttctgtaagtgaaaagag 27112170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 11290243 - 11290175
Alignment:
Q  271 gtgtcgtatatatgtggcacattcaaatgtgacaatcactatcgtataaataagaaacctcaaaccacc 339  Q
    ||||||||||||||| | ||| ||||| |||| |||||||| |||||| || || ||||||||||||||    
T  11290243 gtgtcgtatatatgttgtacactcaaaggtgaaaatcactaccgtatacatgagcaacctcaaaccacc 11290175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 39332328 - 39332375
Alignment:
Q  148 agggccgttcctacgaatccagagactcggttctgtaagtgaaaagag 195  Q
    |||||||||||||||||| | ||| |||||||||||| ||||||||||    
T  39332328 agggccgttcctacgaattcggaggctcggttctgtaggtgaaaagag 39332375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 38009071 - 38009117
Alignment:
Q  148 agggccgttcctacgaatccagagactcggttctgtaagtgaaaaga 194  Q
    ||||||||||||| |||||| ||| ||||||||||||| ||||||||    
T  38009071 agggccgttcctatgaatccggaggctcggttctgtaactgaaaaga 38009117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 8646242 - 8646201
Alignment:
Q  294 caaatgtgacaatcactatcgtataaataagaaacctcaaac 335  Q
    ||||||||| |||||||| |||||| ||||||||||||||||    
T  8646242 caaatgtgaaaatcactaccgtatacataagaaacctcaaac 8646201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 11290370 - 11290325
Alignment:
Q  150 ggccgttcctacgaatccagagactcggttctgtaagtgaaaagag 195  Q
    |||||||||||||||| ||||||||||  | |||||||||||||||    
T  11290370 ggccgttcctacgaattcagagactcgactttgtaagtgaaaagag 11290325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 15167482 - 15167527
Alignment:
Q  294 caaatgtgacaatcactatcgtataaataagaaacctcaaaccacc 339  Q
    ||||||||| ||||||||||||||| || || ||||||||||||||    
T  15167482 caaatgtgaaaatcactatcgtatacatgaggaacctcaaaccacc 15167527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 15078794 - 15078750
Alignment:
Q  294 caaatgtgacaatcactatcgtataaataagaaacctcaaaccac 338  Q
    ||||||||| ||||||||||||||| || || |||||||||||||    
T  15078794 caaatgtgaaaatcactatcgtatacatgaggaacctcaaaccac 15078750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 12981505 - 12981458
Alignment:
Q  150 ggccgttcctacgaatccagagactcggttctgtaagtgaaaagaggc 197  Q
    |||||||||||||||||| |||  ||||||||||| ||||||||||||    
T  12981505 ggccgttcctacgaatccggaggttcggttctgtaggtgaaaagaggc 12981458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 23020401 - 23020451
Alignment:
Q  145 cagagggccgttcctacgaatccagagactcggttctgtaagtgaaaagagg 196  Q
    ||||||||||||||||||||||  ||| | ||||||||||||||||||||||    
T  23020401 cagagggccgttcctacgaatctggaggc-cggttctgtaagtgaaaagagg 23020451  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 12419414 - 12419464
Alignment:
Q  148 agggccgttcctacgaatccagagactcggttctgtaagtgaaaagaggcc 198  Q
    ||||||||||||| |||||| ||| ||||| | ||||||||||||||||||    
T  12419414 agggccgttcctatgaatccggaggctcggctttgtaagtgaaaagaggcc 12419464  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 2611180 - 2611229
Alignment:
Q  148 agggccgttcctacgaatccagagactcggttctgtaagtgaaaagaggc 197  Q
    |||| |||||||| |||||| ||| |||||||||| ||||||||||||||    
T  2611180 agggtcgttcctatgaatccggaggctcggttctgcaagtgaaaagaggc 2611229  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 38971433 - 38971388
Alignment:
Q  150 ggccgttcctacgaatccagagactcggttctgtaagtgaaaagag 195  Q
    ||||||| ||||||||| |||||||||| | |||||||||||||||    
T  38971433 ggccgtttctacgaatctagagactcggctttgtaagtgaaaagag 38971388  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 230781 - 230831
Alignment:
Q  148 agggccgttcctacgaatccagagactcggttctgtaagtgaaaagaggcc 198  Q
    |||||||||||||||||||| ||  ||||| |||||||| |||||||||||    
T  230781 agggccgttcctacgaatccggaagctcggatctgtaagggaaaagaggcc 230831  T

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Target: scaffold1590 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 302 - 370
Alignment:
Q  271 gtgtcgtatatatgtggcacattcaaatgtgacaatcactatcgtataaataagaaacctcaaaccacc 339  Q
    |||||||||||||| || |||  ||||||||| |||||||| |||||| || |  ||||||||||||||    
T  302 gtgtcgtatatatgcggtacacccaaatgtgaaaatcactaccgtatacatgatgaacctcaaaccacc 370  T

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Target: scaffold1320 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 1390 - 1346
Alignment:
Q  294 caaatgtgacaatcactatcgtataaataagaaacctcaaaccac 338  Q
    ||||||||| ||||||||||||||| || || |||||||||||||    
T  1390 caaatgtgaaaatcactatcgtatacatgaggaacctcaaaccac 1346  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 38984 - 38916
Alignment:
Q  271 gtgtcgtatatatgtggcacattcaaatgtgacaatcactatcgtataaataagaaacctcaaaccacc 339  Q
    |||||||||||||| |  |||  ||||||||| |||||||| |||||| || || ||||||||||||||    
T  38984 gtgtcgtatatatgcgatacacacaaatgtgaaaatcactaccgtatatatgaggaacctcaaaccacc 38916  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 23641240 - 23641284
Alignment:
Q  151 gccgttcctacgaatccagagactcggttctgtaagtgaaaagag 195  Q
    ||||||||||||||||  ||| |||||||||||| ||||||||||    
T  23641240 gccgttcctacgaatctggaggctcggttctgtaggtgaaaagag 23641284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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