View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18818_low_8 (Length: 285)
Name: NF18818_low_8
Description: NF18818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18818_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 50538941 - 50538667
Alignment:
| Q |
1 |
gataaagaatggagatcgcgccagaagtgtctttagcctccaatgcctgagcaattgaatccgttgtggcaggaagataagatgtagacatagcttctgc |
100 |
Q |
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| T |
50538941 |
gataaagaatggagatcgcgccagaagtgtctttagcctccaatgcctgagcaattgaatccgttgtggcaggaagataagatgtagacatagcttctgc |
50538842 |
T |
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| Q |
101 |
nnnnnnnnntagaaaatgaggacaaatattaaaactagcagcttctacattacaggcaatagctttatgagtgcaaattatccccttaaaattgaatgct |
200 |
Q |
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| T |
50538841 |
aaataaaaatagaaaatgaggacaaatattaaaactagcagcttctacattacaggcaatagctttatgagtgcaaattatccccttaaaattgaatgct |
50538742 |
T |
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| Q |
201 |
cataaattaatcattcaaagggatactgctttctggagaaagggagaaaattggttgcacaaaaatgtatgatga |
275 |
Q |
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| T |
50538741 |
cataaattaatcattcaaagggatactgctttctggagaaagggagaaaattggttgcacaaaaatatatgatga |
50538667 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1143416 - 1143491
Alignment:
| Q |
1 |
gataaagaatggagatcgcgccagaagtgtctttagcctccaatgcctgagcaattgaatccgttgtggcaggaag |
76 |
Q |
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|||||||||||||||| | |||| | ||||||||||||||||||||||||||| || || |||||||||||||| |
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| T |
1143416 |
gataaagaatggagatagactcagatgggtctttagcctccaatgcctgagcaatagactctgttgtggcaggaag |
1143491 |
T |
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