View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_high_10 (Length: 442)
Name: NF18819_high_10
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 38522870 - 38523293
Alignment:
| Q |
1 |
acctgaaaaatcaaccatttagaatgtcacgaaaaatagttttaactagataacaatgcacacaaaaattagtagtgcgacacagatgaatactcaataa |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38522870 |
acctgaaaaatcaaccatttagaatgtcacaaaaaatagttttaactagataacaatgcacacaaaaattagtagtgcgacacagatgaatactcaataa |
38522969 |
T |
|
| Q |
101 |
atggaaaatagtttcataaaactgtacctccttcaacatgtaaataattgaatcaaaatctgtcccccttgccaaagatcttgtagaagcagcctgaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38522970 |
atggaaaatagtttcataaaactgtacctccttcaacatgtaaataattgaatcaaaatctgtcccccttgccaaagatcttgtagaagcagcctgaaca |
38523069 |
T |
|
| Q |
201 |
gaaagacacatcagtttgagaatcattaaagacagtgataaattataataatatcagcattatagaaaataagaaagaatgaaattaacaaacctggata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38523070 |
gaaagacacatcagtttgagaatcattaaagacagtgataaattataataatatcagcattatagaaaataagaaagaatgaaattaacaaacctggata |
38523169 |
T |
|
| Q |
301 |
acaggaccatctgccaaaggatccgagtatggaacaccaagctcaataatgtcagatccacatgaatcaagaactttcagtgcttctgctgtggttgaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38523170 |
acaggaccatctgccaaaggatccgagtatggaacaccaagctcaataatgtcagatccacatgaatcaagaactttcagtgcttctgctgtggttgaaa |
38523269 |
T |
|
| Q |
401 |
gatcaggatcaccagctgtgatgt |
424 |
Q |
| |
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| T |
38523270 |
gatcaggatcaccagctgtgatgt |
38523293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 290 - 423
Target Start/End: Complemental strand, 41387259 - 41387126
Alignment:
| Q |
290 |
aaacctggataacaggaccatctgccaaaggatccgagtatggaacaccaagctcaataatgtcagatccacatgaatcaagaactttcagtgcttctgc |
389 |
Q |
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||||||| |||||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
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| T |
41387259 |
aaacctgaataacaggaccatctgccaaaggatcagaatatggaacgccaagctcaataatatcagatccacaggaatcgagaactttcagtgcttctgc |
41387160 |
T |
|
| Q |
390 |
tgtggttgaaagatcaggatcaccagctgtgatg |
423 |
Q |
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|||||||||||| || |||||||| ||||||||| |
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| T |
41387159 |
tgtggttgaaaggtcgggatcaccggctgtgatg |
41387126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 41387422 - 41387303
Alignment:
| Q |
99 |
aaatggaaaatagtttcataaaactgtacctccttcaacatgtaaataattgaatcaaaatctgtcccccttgccaaagatcttgtagaagcagcctgaa |
198 |
Q |
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|||||| |||| |||||||| || | |||||| |||||||| |||||||||||||||||| |||||||||| |||| || ||||| ||||||||||| |
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| T |
41387422 |
aaatggcaaatggtttcatagaaat-tacctcattcaacatagaaataattgaatcaaaattgctcccccttgctaaagctcgtgtagcagcagcctgaa |
41387324 |
T |
|
| Q |
199 |
cagaaagacacatcagtttga |
219 |
Q |
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|||||||||| ||||||||| |
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| T |
41387323 |
cagaaagacatgtcagtttga |
41387303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 41388427 - 41388398
Alignment:
| Q |
39 |
gttttaactagataacaatgcacacaaaaa |
68 |
Q |
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| T |
41388427 |
gttttaactagataacaatgcacacaaaaa |
41388398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 3300914 - 3300997
Alignment:
| Q |
142 |
aaataattgaatcaaaatctgtccccctt-gccaaagatcttgtagaagcagcctgaacagaaagacacatcagtttgagaatca |
225 |
Q |
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|||||||||||||||||| ||||||||| || ||||||| ||||| |||| || || ||||||||||||||||||||||||||| |
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| T |
3300914 |
aaataattgaatcaaaattggtccccctttgctaaagatcgtgtagcagcatccgga-cagaaagacacatcagtttgagaatca |
3300997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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