View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_high_15 (Length: 397)
Name: NF18819_high_15
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_high_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 45770381 - 45770002
Alignment:
| Q |
18 |
aagggaaggtggcaagtgtagcacgctttccttgcttgtcatttctcaaattaattgtttcattttattatgtataagatgatcctattaacttcaatta |
117 |
Q |
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| T |
45770381 |
aagggaaggtggcaagtgtagcacgctttccttgcttgtcatttctcaaattaattgtttcattttattatgtagaagatgatcctattaacttcaatta |
45770282 |
T |
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| Q |
118 |
gtagcaaaccttctattcccttgttttatttcttctttatgaagttttctaaatgatgcctcatggtactaattgttctttatcattnnnnnnnctgatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45770281 |
gtagcaaaccttctattcccttgttttatttcttctttatgaagttttctaaatgatgcctcatggtactaattgttctttatcattaaaaaaactgatt |
45770182 |
T |
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| Q |
218 |
ggttcaatttgattgttactcttggccttttattcatttttgttttgttttggattaattagtattagtatggactattagatcatattagctctaatac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45770181 |
ggttcaatttgattgttactcttggccttttattcatttttgttttgttttggattaattagtattagtatggactattagatcattttagctctaatac |
45770082 |
T |
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| Q |
318 |
catgttgaactttagtgcaccccaaattgaataagtcttccgagttttgtgtaacattactttcttccatttttaccctt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45770081 |
catgttgaactttagtgcaccccaaattgaataagtcttccgagttttgtgtaacattactttcttccatttttaccctt |
45770002 |
T |
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