View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18819_high_18 (Length: 356)
Name: NF18819_high_18
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 34 - 340
Target Start/End: Complemental strand, 54505422 - 54505120
Alignment:
| Q |
34 |
cccacgaaaatgaaaattaaggaaaagtaagaccaaccgttgtagttcaagggcgaaattaatcattctaatcaaccacacaagaaactaactactacat |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
54505422 |
cccacgaaaatgaaaattaaggaaaagtaagaccaaccgttgtagttcaagggcgaaattaatcattctaatcaaccacacaagaaacta----ctacat |
54505327 |
T |
|
| Q |
134 |
gaaaatgaaaattaaggaaacatgaaagcaaaatgaaaatgtgcttgactttgaccccacacacaatattgcataatatttatgcatgtagtcacaaagc |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54505326 |
gaaaatgaaaattaaggaaacatgaaagcaaaatgaaaatgtgcttgactttgaccccacacacaatattgcataatatttatgcatgtagtcacaaagc |
54505227 |
T |
|
| Q |
234 |
ttaattcaaaagacatcaatgcaaatacgtaaacataatctagaaaattaagaacatcatcatagcgattgaaacttccaagaatccatggccagcacca |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54505226 |
ttaattcaaaagacatcaatgcaaatacgtaaacataatctagaaaattaagaacatcatcatagcgattgaaacttccaagaatccatggccagcacca |
54505127 |
T |
|
| Q |
334 |
ccacctt |
340 |
Q |
| |
|
||||||| |
|
|
| T |
54505126 |
ccacctt |
54505120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University