View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_high_21 (Length: 317)
Name: NF18819_high_21
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 51180546 - 51180715
Alignment:
| Q |
1 |
actaccaagcaagatttgagnnnnnnnnacgggtagaagatttgatcagtactatttaatttctctatataaggaggatcaatgttgttttgttttacag |
100 |
Q |
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| T |
51180546 |
actaccaagcaagatttgagttttttttacgggtaaaagatttgattagtactatttaatttctctatataaggaggatcaatgttgttttgttttacag |
51180645 |
T |
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| Q |
101 |
tatgataagtatcctagctaataattagtaccgctttgctttcatcaaaactttgttcactctttttctt |
170 |
Q |
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| T |
51180646 |
tatgataagtatcctagctaataattagtaccgctttgctttcatcaaaactttgttcactctttttctt |
51180715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 134 - 294
Target Start/End: Original strand, 51185534 - 51185695
Alignment:
| Q |
134 |
ctttgctttcatcaaaactttgttcactctttttcttgtacttgcctgcgt-actacattatgcatggcttcctcaaaacgctattttcctcatggttct |
232 |
Q |
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| T |
51185534 |
ctttgctttcatcaaaactttgttcactcttttccttgtacttgtctgcgttactcgattatacatggcttactcaaaaccctattttcctcatggttct |
51185633 |
T |
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| Q |
233 |
cattctcaaggagaaaataagaggatgaagttggaacattcttctcgagcgccgacaacaac |
294 |
Q |
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| T |
51185634 |
cattctcaaggagaaaataagaggatgaaattggaacattcttctcgaaagccaacaacaac |
51185695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 51185484 - 51185521
Alignment:
| Q |
60 |
tttctctatataaggaggatcaatgttgttttgtttta |
97 |
Q |
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| T |
51185484 |
tttctctatataaagaggatcaatgttgttttctttta |
51185521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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