View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18819_high_26 (Length: 292)

Name: NF18819_high_26
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18819_high_26
NF18819_high_26
[»] chr5 (6 HSPs)
chr5 (1-81)||(11223008-11223088)
chr5 (11-111)||(22448674-22448778)
chr5 (11-111)||(22457992-22458096)
chr5 (16-75)||(20834115-20834173)
chr5 (16-75)||(33955946-33956004)
chr5 (16-75)||(20035672-20035730)
[»] chr8 (8 HSPs)
chr8 (11-129)||(24633692-24633811)
chr8 (11-111)||(33592479-33592581)
chr8 (11-111)||(33602118-33602220)
chr8 (11-111)||(42896494-42896596)
chr8 (16-74)||(12925038-12925096)
chr8 (16-75)||(20029853-20029911)
chr8 (16-75)||(20037614-20037672)
chr8 (6-42)||(31575843-31575879)
[»] chr1 (5 HSPs)
chr1 (11-111)||(21919775-21919877)
chr1 (16-75)||(3471392-3471450)
chr1 (16-75)||(14272460-14272519)
chr1 (16-75)||(14282326-14282385)
chr1 (32-74)||(21633313-21633355)
[»] scaffold0053 (1 HSPs)
scaffold0053 (11-111)||(2605-2709)
[»] chr7 (4 HSPs)
chr7 (16-75)||(33292608-33292666)
chr7 (16-75)||(15947818-15947877)
chr7 (16-80)||(14635183-14635247)
chr7 (16-80)||(14644883-14644947)
[»] chr6 (2 HSPs)
chr6 (16-75)||(23884189-23884247)
chr6 (16-80)||(22065985-22066048)
[»] scaffold0334 (1 HSPs)
scaffold0334 (11-111)||(12888-12990)
[»] scaffold0021 (1 HSPs)
scaffold0021 (16-75)||(142843-142901)
[»] chr3 (2 HSPs)
chr3 (16-80)||(46306028-46306091)
chr3 (16-80)||(5385359-5385422)
[»] scaffold0206 (1 HSPs)
scaffold0206 (16-75)||(1783-1841)
[»] chr4 (2 HSPs)
chr4 (18-75)||(20884896-20884953)
chr4 (69-111)||(50516993-50517035)
[»] chr2 (1 HSPs)
chr2 (16-75)||(3396599-3396655)


Alignment Details
Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 11223088 - 11223008
Alignment:
Q  1 tgaaaaagacattgatgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttggtttta 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11223088 tgaaaaagacattgatgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttgctttta 11223008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 22448674 - 22448778
Alignment:
Q  11 attgatgaagagattgatagcct-tttgctttgagagaga--taaatgcttt-gtgtttcaaactcttggttttagacttggatgcattcctctatttat 106  Q
    ||||||||||||||||||||| | ||||||||||||||||  |||||||||| || ||||||||||||| |||| | ||||||||  |||||||||||||    
T  22448674 attgatgaagagattgatagcttgtttgctttgagagagagataaatgcttttgtatttcaaactcttgatttttgccttggatgtcttcctctatttat 22448773  T
Q  107 agaag 111  Q
    |||||    
T  22448774 agaag 22448778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 22457992 - 22458096
Alignment:
Q  11 attgatgaagagattgatagcct-tttgctttgagagaga--taaatgcttt-gtgtttcaaactcttggttttagacttggatgcattcctctatttat 106  Q
    ||||||||||||||||||||| | ||||||||||||||||  |||||||||| || ||||||||||||| |||| | ||||||||  |||||||||||||    
T  22457992 attgatgaagagattgatagcttgtttgctttgagagagagataaatgcttttgtatttcaaactcttgatttttgccttggatgtcttcctctatttat 22458091  T
Q  107 agaag 111  Q
    |||||    
T  22458092 agaag 22458096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 20834173 - 20834115
Alignment:
Q  16 tgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttg 75  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  20834173 tgaagagattgatagc-ttttgctttgagagagataaatgctttgtatttcaaactcttg 20834115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 33955946 - 33956004
Alignment:
Q  16 tgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttg 75  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  33955946 tgaagagattgatagc-ttttgctttgagagagataaatgctttgtatttcaaactcttg 33956004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 20035730 - 20035672
Alignment:
Q  16 tgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttg 75  Q
    ||||||||||||| || ||||||||||||||||||||||||||||  |||||||||||||    
T  20035730 tgaagagattgatggc-ttttgctttgagagagataaatgctttgcatttcaaactcttg 20035672  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 24633811 - 24633692
Alignment:
Q  11 attgatgaagagattgatagcct-tttgctttgagagagataaatgctttgtgtttcaaactcttggttttagacttggatgcattcctctatttataga 109  Q
    |||||||||||||||||||   | |||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||  ||||||||||||||||    
T  24633811 attgatgaagagattgataatttgtttgctttgagatagataaatgctttgtatttcaaactcttggttttagccttggatgtcttcctctatttataga 24633712  T
Q  110 agtgagatacttgttgccca 129  Q
    ||| | | ||||||| ||||    
T  24633711 agtcaaagacttgttcccca 24633692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 33592479 - 33592581
Alignment:
Q  11 attgatgaagagattgatagcct-tttgctttgagagagataaatgcttt-gtgtttcaaactcttggttttagacttggatgcattcctctatttatag 108  Q
    |||| |||||||||||||||| | ||||||||| || ||||||||||||| || |||||||||||||||||| | ||||||||  |||||||||||||||    
T  33592479 attgttgaagagattgatagcttgtttgctttgtgaaagataaatgcttttgtatttcaaactcttggtttttgccttggatgtcttcctctatttatag 33592578  T
Q  109 aag 111  Q
    |||    
T  33592579 aag 33592581  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 33602118 - 33602220
Alignment:
Q  11 attgatgaagagattgatagcct-tttgctttgagagagataaatgcttt-gtgtttcaaactcttggttttagacttggatgcattcctctatttatag 108  Q
    |||| |||||||||||||||| | ||||||||| || ||||||||||||| || |||||||||||||||||| | ||||||||  |||||||||||||||    
T  33602118 attgttgaagagattgatagcttgtttgctttgtgaaagataaatgcttttgtatttcaaactcttggtttttgccttggatgtcttcctctatttatag 33602217  T
Q  109 aag 111  Q
    |||    
T  33602218 aag 33602220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 42896494 - 42896596
Alignment:
Q  11 attgatgaagagattgatagcct-tttgctttgagagagataaatgcttt-gtgtttcaaactcttggttttagacttggatgcattcctctatttatag 108  Q
    |||| |||||||||||||||| | ||||||||| || ||||||||| ||| || |||||||||||||||||| | ||||||||  |||||||||||||||    
T  42896494 attgttgaagagattgatagcttgtttgctttgtgaaagataaatgtttttgtatttcaaactcttggtttttgccttggatgtcttcctctatttatag 42896593  T
Q  109 aag 111  Q
    |||    
T  42896594 aag 42896596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 12925096 - 12925038
Alignment:
Q  16 tgaagagattgatagccttttgcttt-gagagagataaatgctttgtgtttcaaactctt 74  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  12925096 tgaagagatttatagc-ttttgcttttgagagagataaatgctttgtatttcaaactctt 12925038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 20029911 - 20029853
Alignment:
Q  16 tgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttg 75  Q
    |||||||||||||||| ||||||||||||||||||||||| | | | |||||||||||||    
T  20029911 tgaagagattgatagc-ttttgctttgagagagataaatgttatttatttcaaactcttg 20029853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 20037672 - 20037614
Alignment:
Q  16 tgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttg 75  Q
    |||||||||||||||| ||||||||||||||||||||||| | | | |||||||||||||    
T  20037672 tgaagagattgatagc-ttttgctttgagagagataaatgttatttatttcaaactcttg 20037614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 31575843 - 31575879
Alignment:
Q  6 aagacattgatgaagagattgatagccttttgctttg 42  Q
    |||| ||||||||||||||||||||||||||||||||    
T  31575843 aagagattgatgaagagattgatagccttttgctttg 31575879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 21919775 - 21919877
Alignment:
Q  11 attgatgaagagattgatagcct-tttgctttgagagagataaatgcttt-gtgtttcaaactcttggttttagacttggatgcattcctctatttatag 108  Q
    |||| |||||||||||||||  | |||||||||||||||||||||||||| || |||||||||||||||||| | ||||||||  |||||||||||||||    
T  21919775 attgttgaagagattgatagtttgtttgctttgagagagataaatgcttttgtatttcaaactcttggtttttgccttggatgtcttcctctatttatag 21919874  T
Q  109 aag 111  Q
    |||    
T  21919875 aag 21919877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 3471392 - 3471450
Alignment:
Q  16 tgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttg 75  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||    
T  3471392 tgaagagattgatagt-ttttgctttgagagagataaatgctttgtatttcaaactcttg 3471450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 14272460 - 14272519
Alignment:
Q  16 tgaagagattgatagccttttgc-tttgagagagataaatgctttgtgtttcaaactcttg 75  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||    
T  14272460 tgaagagattgatag-cttttgcttttgagagagataaatgctttgtatttcaaactcttg 14272519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 14282326 - 14282385
Alignment:
Q  16 tgaagagattgatagccttttgc-tttgagagagataaatgctttgtgtttcaaactcttg 75  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||    
T  14282326 tgaagagattgatag-cttttgcttttgagagagataaatgctttgtatttcaaactcttg 14282385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 21633355 - 21633313
Alignment:
Q  32 cttttgctttgagagagataaatgctttgtgtttcaaactctt 74  Q
    |||||||||||||||||||||||||||||| ||||||| ||||    
T  21633355 cttttgctttgagagagataaatgctttgtatttcaaattctt 21633313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 2605 - 2709
Alignment:
Q  11 attgatgaagagattgatagcct-tttgctttgagagaga--taaatgcttt-gtgtttcaaactcttggttttagacttggatgcattcctctatttat 106  Q
    ||||||||||| ||||||||| | ||||||||||||||||  |||||||||| || ||||||||||||| |||||| ||||||||  |||||||||||||    
T  2605 attgatgaagaaattgatagcttgtttgctttgagagagagataaatgcttttgtatttcaaactcttgattttagccttggatgtcttcctctatttat 2704  T
Q  107 agaag 111  Q
    |||||    
T  2705 agaag 2709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 33292608 - 33292666
Alignment:
Q  16 tgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttg 75  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  33292608 tgaagagattgatagc-ttttgctttgagagagataaatgctttgtatttcaaactcttg 33292666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 15947818 - 15947877
Alignment:
Q  16 tgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttg 75  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||| |||||||||||||    
T  15947818 tgaagagattgatagctttttcttttgagagagataaatgctttgtatttcaaactcttg 15947877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 14635183 - 14635247
Alignment:
Q  16 tgaagagatt-gatagccttttgctttgagagagataaatgctttgtgtttcaaactcttggtttt 80  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  14635183 tgaagagatttgatagc-ttttgctttgagagagataaatgctttgtatttcaaactcttgctttt 14635247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 14644883 - 14644947
Alignment:
Q  16 tgaagagatt-gatagccttttgctttgagagagataaatgctttgtgtttcaaactcttggtttt 80  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  14644883 tgaagagatttgatagc-ttttgctttgagagagataaatgctttgtatttcaaactcttgctttt 14644947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 23884247 - 23884189
Alignment:
Q  16 tgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttg 75  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  23884247 tgaagagattgatagc-ttttgctttgagagagataaatgctttgtatttcaaactcttg 23884189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 22066048 - 22065985
Alignment:
Q  16 tgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttggtttt 80  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  22066048 tgaagagattgatagc-ttttgctttgagagaaataaatgctttgtatttcaaactcttgctttt 22065985  T

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Target: scaffold0334 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 12888 - 12990
Alignment:
Q  11 attgatgaagagattgatagcct-tttgctttgagagagataaatgc-tttgtgtttcaaactcttggttttagacttggatgcattcctctatttatag 108  Q
    |||| |||||||||||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||| | |||   ||  |||||||||||||||    
T  12888 attgttgaagagattgatagcttgtttgctttgagagagataaatgcttttgtatttcaaactcttggttttcgccttatttgtcttcctctatttatag 12987  T
Q  109 aag 111  Q
    |||    
T  12988 aag 12990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 142901 - 142843
Alignment:
Q  16 tgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttg 75  Q
    |||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||    
T  142901 tgaagagattgatagcttttt-ctttgagagagataaatgctttgtatttcaaactcttg 142843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 46306028 - 46306091
Alignment:
Q  16 tgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttggtttt 80  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  46306028 tgaagagattggtagt-ttttgctttgagagagataaatgctttgtatttcaaactgttgctttt 46306091  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 5385422 - 5385359
Alignment:
Q  16 tgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttggtttt 80  Q
    ||||||| |||||||  |||| ||||||||||||||||| |||||| ||||||||||||| ||||    
T  5385422 tgaagaggttgatagt-ttttactttgagagagataaatactttgtatttcaaactcttgctttt 5385359  T

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Target: scaffold0206 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 1841 - 1783
Alignment:
Q  16 tgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttg 75  Q
    |||||||||||||||| ||||||||||||||||||||||| | | | |||||||||||||    
T  1841 tgaagagattgatagc-ttttgctttgagagagataaatgttatttatttcaaactcttg 1783  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 20884896 - 20884953
Alignment:
Q  18 aagagattgatagccttttgc-tttgagagagataaatgctttgtgtttcaaactcttg 75  Q
    ||||||||||||| ||||||| ||||||||||||||||||||| | |||||||||||||    
T  20884896 aagagattgatag-cttttgcttttgagagagataaatgctttctatttcaaactcttg 20884953  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 50516993 - 50517035
Alignment:
Q  69 actcttggttttagacttggatgcattcctctatttatagaag 111  Q
    ||||||||||||||||||| |||| ||||||||||||||||||    
T  50516993 actcttggttttagacttgaatgctttcctctatttatagaag 50517035  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 3396655 - 3396599
Alignment:
Q  16 tgaagagattgatagccttttgctttgagagagataaatgctttgtgtttcaaactcttg 75  Q
    |||||||||||| ||| |||||||||||||||  |||||||||||| |||||||||||||    
T  3396655 tgaagagattgacagc-ttttgctttgagaga--taaatgctttgtatttcaaactcttg 3396599  T

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