View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_high_29 (Length: 286)
Name: NF18819_high_29
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 34720259 - 34720526
Alignment:
| Q |
1 |
ttacctcagaaataccccttaaattttcccttataatttctcttctgcgatcttgtactaaaccacgcaatccaatcccattgctatctatagttgcaaa |
100 |
Q |
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| T |
34720259 |
ttacctcagaaataccccttaaattttcccttataatttctcttctgcgatcttgtactaaaccacgcaatccaatcccattgctatctatagttgcaaa |
34720358 |
T |
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| Q |
101 |
tcttggttgtacaaggacatgcattccattttcctgaataaaaatgtaatttaagacgacaagagtggtatgatattgagatcaactaccacttttgaag |
200 |
Q |
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| T |
34720359 |
tcttggttgtacaaggacatgcattccattttcctgaataaaaatgtaatttaagacgacaagagtggtatgatattgagatcaactatcaattttgaag |
34720458 |
T |
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| Q |
201 |
aactttgttaatttttattcacagcgtaacaaacttctaaaaaactagctaatgttcgctttgctacc |
268 |
Q |
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| T |
34720459 |
aactttgttaatttttattcacagcgtaacaaacttctaaaaaactagctaatgttcgctttgctacc |
34720526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 34720685 - 34720820
Alignment:
| Q |
1 |
ttacctcagaaataccccttaaattttcccttataatttctcttctgcgatcttgtactaaaccacgcaatccaatcc---cattgctatctatagttgc |
97 |
Q |
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||||||||| |||||| || |||||||||||||||||||||||| || |||||||||||||||| ||| || ||||| |||||||||| ||| | |
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| T |
34720685 |
ttacctcaggcatacccgttgaattttcccttataatttctcttccgcaatcttgtactaaaccatgcattctaatcctgttcttgctatctacggttac |
34720784 |
T |
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| Q |
98 |
aaatcttggttgtacaaggacatgcattccattttc |
133 |
Q |
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|| |||| ||||||||||||||| ||||||||||| |
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| T |
34720785 |
aagtcttcgttgtacaaggacatctattccattttc |
34720820 |
T |
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