View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_high_33 (Length: 265)
Name: NF18819_high_33
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 56229605 - 56229835
Alignment:
| Q |
9 |
gaagaatattaatgtgttgtttttcctttcaattttgcgtttgatattgcagagcatccaaacgttgtgtcagtgttgttgaaccgaggaagaaagttac |
108 |
Q |
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| T |
56229605 |
gaagaatatcaatgtgttgtttttcctttcaattatgcgtttgatattgcagagcatccaaacgttgtgtcagtgttgttgaaccgaggaagaaagttac |
56229704 |
T |
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| Q |
109 |
acactacacactcatgggaatttatgtcactggaacacaatggtgtggctccttctcattccctccttacaaaagctagatacggtgaagatgttattat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56229705 |
acactacacactcatgggaatttatgtcactggaacacaatggtgtggctccttctcattccctccttacaaaagctagatacggtgaagatgttattat |
56229804 |
T |
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| Q |
209 |
tgggaaccttgacactggtaaaattttatca |
239 |
Q |
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| T |
56229805 |
tgggaaccttgacactggtaaaattttatca |
56229835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 39186995 - 39187207
Alignment:
| Q |
17 |
ttaatgtgttgtttttcctttcaattttgcgtttgatattgcagagcatccaaacgttgtgtcagtgttgttgaaccgaggaagaaagttacacactaca |
116 |
Q |
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| T |
39186995 |
ttaatgttttgttttttctttccatcttgtgttttatattgtagagcatccaaacgttgtgtcagtgttgttaaaccgaggaagaaagttacacactaca |
39187094 |
T |
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| Q |
117 |
cactcatgggaatttatgtcactggaacacaatggtgtggctccttctcattccctccttacaaaagctagatacggtgaagatgttattattgggaacc |
216 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| | |
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| T |
39187095 |
cactcatgggaattcatgtcaatggaacacaatggtgtggctccttctcattccctctttagaaaagcaagatacggtgaagatgttattattgggaatc |
39187194 |
T |
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| Q |
217 |
ttgacactggtaa |
229 |
Q |
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|||| ||||||| |
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| T |
39187195 |
ttgattctggtaa |
39187207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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