View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18819_high_37 (Length: 256)

Name: NF18819_high_37
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18819_high_37
NF18819_high_37
[»] chr6 (2 HSPs)
chr6 (1-250)||(26452078-26452327)
chr6 (1-146)||(26446527-26446671)
[»] chr8 (6 HSPs)
chr8 (6-250)||(43583359-43583604)
chr8 (1-250)||(24744416-24744665)
chr8 (1-146)||(43579702-43579847)
chr8 (1-146)||(24749981-24750125)
chr8 (29-78)||(41522706-41522755)
chr8 (13-57)||(9190481-9190525)
[»] chr5 (4 HSPs)
chr5 (1-250)||(21006162-21006411)
chr5 (1-146)||(21011757-21011902)
chr5 (31-117)||(30253637-30253724)
chr5 (13-57)||(8284283-8284327)
[»] chr1 (5 HSPs)
chr1 (1-183)||(32960126-32960309)
chr1 (1-101)||(48332737-48332836)
chr1 (6-133)||(24501948-24502075)
chr1 (45-120)||(43190474-43190549)
chr1 (21-70)||(32959886-32959935)
[»] chr7 (2 HSPs)
chr7 (1-140)||(7338164-7338302)
chr7 (23-57)||(47928469-47928503)
[»] chr3 (2 HSPs)
chr3 (13-111)||(48866174-48866272)
chr3 (83-120)||(2224975-2225012)
[»] chr2 (1 HSPs)
chr2 (28-78)||(7983713-7983763)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 26452327 - 26452078
Alignment:
Q  1 cttattttttccttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaact 100  Q
    ||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26452327 cttattttttc-ttctcacttcagtcccttaacttttaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaatt 26452229  T
Q  101 tttttcaaaaaa-cgttaactctgaacatgtggcactccagcttggccaatcacttgaggacatggcaaatcactgtcagcaatataaaaggggatcaaa 199  Q
    | ||  |||||| |||||||| ||  || |||||  ||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  26452228 tgttaaaaaaaaacgttaactatgttcaggtggctgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaatataaaaggggatgaaa 26452129  T
Q  200 tgtcaaaaattagggttttatttgtctcattcctccttctctcttcatctc 250  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| ||||    
T  26452128 tgtcaaaaattagggttttattgatctcattcctccttctctcttcttctc 26452078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 26446527 - 26446671
Alignment:
Q  1 cttattttttccttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaact 100  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  26446527 cttattttttc-ttctcacttcagtctcttaacttttaaatgtgtcaatttggtcctgtaagtactcttctgtttacttagttggtcctttctattaact 26446625  T
Q  101 tttttcaaaaaacgttaactctgaacatgtggcactccagcttggc 146  Q
    ||||  ||||||||||||||||| ||| |||||  |||||||||||    
T  26446626 ttttgaaaaaaacgttaactctgtacaggtggctgtccagcttggc 26446671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 43583604 - 43583359
Alignment:
Q  6 tttttccttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaactttttt 105  Q
    ||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||  ||||| |||||||||||||||||||     
T  43583604 ttttttcttctcacttcagtcccttaacttttaaatgtgtcaatttggtcctgtaagttctcttccgtttacccagttgatcctttctgttaactttttg 43583505  T
Q  106 caaaaaa-cgttaactctgaacatgtggcactccagcttggccaatcacttgaggacatggcaaatcactgtcagcaatataaaaggggatcaaatgtca 204  Q
     |||||| ||||||||||| | | |||||  ||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  43583504 aaaaaaaacgttaactctgcataagtggctgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaatataaaaggggatgaaatgtca 43583405  T
Q  205 aaaattagggttttatttgtctcattcctccttctctcttcatctc 250  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||    
T  43583404 aaaattagggttttattgatctcattcctccttctctcttcttctc 43583359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 24744416 - 24744665
Alignment:
Q  1 cttattttttccttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaact 100  Q
    ||||||||||| |||||||||||||  ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24744416 cttattttttc-ttctcacttcagttccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgttaact 24744514  T
Q  101 tttttcaaaa-aacgttaactctgaacatgtggcactccagcttggccaatcacttgaggacatggcaaatcactgtcagcaatataaaaggggatcaaa 199  Q
    ||||  |||| |||||||||| || ||| |||||  ||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  24744515 ttttgaaaaaaaacgttaactatgtacaggtggctgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaatataaaaggggatgaaa 24744614  T
Q  200 tgtcaaaaattagggttttatttgtctcattcctccttctctcttcatctc 250  Q
    |||||||||||||||||| |||  || ||||||||||||||||||| ||||    
T  24744615 tgtcaaaaattagggtttcattgatcacattcctccttctctcttcttctc 24744665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 43579702 - 43579847
Alignment:
Q  1 cttattttttccttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaact 100  Q
    ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43579702 cttattttttc-ttctcacttcagtcccttaactattaaatgtttcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaact 43579800  T
Q  101 tttt-tcaaaaaacgttaactctgaacatgtggcactccagcttggc 146  Q
    ||||   |||||||||||||||||||||||||||| |||||||||||    
T  43579801 ttttgaaaaaaaacgttaactctgaacatgtggcagtccagcttggc 43579847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 24750125 - 24749981
Alignment:
Q  1 cttattttttccttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaact 100  Q
    ||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24750125 cttattttttc-ttctcacttcagtcccttaacttttaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaact 24750027  T
Q  101 tttttcaaaaaacgttaactctgaacatgtggcactccagcttggc 146  Q
    ||||  ||| ||||||||||||| ||| |||||  |||||| ||||    
T  24750026 ttttgaaaacaacgttaactctgtacaggtggctgtccagcatggc 24749981  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 41522755 - 41522706
Alignment:
Q  29 ttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttact 78  Q
    ||||||||||| ||||||||||||||||| |||||  ||| |||||||||    
T  41522755 ttaactattaagtgtgtcaatttggtcctataagtcttctgccgtttact 41522706  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 9190525 - 9190481
Alignment:
Q  13 ttctcacttcagtctcttaactattaaatgtgtcaatttggtcct 57  Q
    |||||| || |||| |||||||||||||||| |||||||||||||    
T  9190525 ttctcagtttagtcccttaactattaaatgtttcaatttggtcct 9190481  T

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Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 21006162 - 21006411
Alignment:
Q  1 cttattttttccttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaact 100  Q
    ||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||| |||||||||||||  ||||| ||||||| |||||||    
T  21006162 cttattttttc-ttctcactttagtcccttaacttttaaatgtgtcaatttggtcctgtaagttctcttccgtttacccagttgatcctttcagttaact 21006260  T
Q  101 tttttcaaaa-aacgttaactctgaacatgtggcactccagcttggccaatcacttgaggacatggcaaatcactgtcagcaatataaaaggggatcaaa 199  Q
    ||||  |||| ||||||||||||| ||| |||||  ||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  21006261 ttttgaaaaaaaacgttaactctgcacaagtggctgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaatataaaaggggatgaaa 21006360  T
Q  200 tgtcaaaaattagggttttatttgtctcattcctccttctctcttcatctc 250  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| ||||    
T  21006361 tgtcaaaaattagggttttattgatctcattcctccttctctcttcttctc 21006411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 21011902 - 21011757
Alignment:
Q  1 cttattttttccttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaact 100  Q
    ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  21011902 cttattttttc-ttctcacttcagtcccttaactattaaatgtttcaatttggtcctgtcagtactcttctgtttacttagttggtcctttctgttaact 21011804  T
Q  101 tttt-tcaaaaaacgttaactctgaacatgtggcactccagcttggc 146  Q
    ||||   |||||||||||||||||||||||||||| |||||||||||    
T  21011803 ttttgaaaaaaaacgttaactctgaacatgtggcagtccagcttggc 21011757  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 30253637 - 30253724
Alignment:
Q  31 aactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaa-cttttttcaaaaaacgtta 117  Q
    ||||||||| |||||||||||||||   |||||  || ||| |||||||||||||||| || ||||||  ||||||||||||||||||    
T  30253637 aactattaagtgtgtcaatttggtctcataagtcttcctccatttacttagttggtccattttgttaagtttttttcaaaaaacgtta 30253724  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 8284327 - 8284283
Alignment:
Q  13 ttctcacttcagtctcttaactattaaatgtgtcaatttggtcct 57  Q
    |||||| || ||||||||||||||||||||| | |||||||||||    
T  8284327 ttctcagtttagtctcttaactattaaatgttttaatttggtcct 8284283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 32960309 - 32960126
Alignment:
Q  1 cttattttttccttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaact 100  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||||||||||||| ||  ||||||| |||||||  ||||  |||||||| ||||||    
T  32960309 cttattttttc-ttctcacttcagttccttaactattaaatgtgtcaatttggtcctcta--tactctttcgtttacccagttaatcctttctattaact 32960213  T
Q  101 tttttc----aaaaaacgttaactctgaacatgtggcactccagcttggccaatcacttgaggacatggcaaatcactgtcagcaat 183  Q
    |||||     ||||||| ||||||||| ||||||||  |||||  |||||||||||||||||||||||| |||||||| ||||||||    
T  32960212 tttttttaaaaaaaaactttaactctgcacatgtggttctccatgttggccaatcacttgaggacatggaaaatcactctcagcaat 32960126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 48332737 - 48332836
Alignment:
Q  1 cttattttttccttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaact 100  Q
    ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  48332737 cttattttttc-ttctcacttcagtcccttaactattaaatgtttcaatttggtcctataaatactcttccgtttacttagttggtcctttctgttaact 48332835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 24502075 - 24501948
Alignment:
Q  6 tttttccttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaactttttt 105  Q
    ||||| |||||||||||| || ||||||| |||||||||||||||||||||||||||| |||||||||||||  ||||| |||||||||||||||||||     
T  24502075 ttttttcttctcacttcattcccttaacttttaaatgtgtcaatttggtcctgtaagttctcttccgtttacccagttgatcctttctgttaactttttg 24501976  T
Q  106 caaaaaacgttaactctgaacatgtggc 133  Q
     |||||||||||| |||| ||| |||||    
T  24501975 aaaaaaacgttaagtctgtacaggtggc 24501948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 43190549 - 43190474
Alignment:
Q  45 tcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaacttttttcaaaaaacgttaact 120  Q
    ||||||||||||||||||||  ||||||||||   |  |||||||||||||||| |||| ||||||||||||||||    
T  43190549 tcaatttggtcctgtaagtatacttccgtttatccaactggtcctttctgttaatttttgtcaaaaaacgttaact 43190474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 32959886 - 32959935
Alignment:
Q  21 tcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttc 70  Q
    ||||||||||||||||||||||| | ||| ||||| ||||| ||||||||    
T  32959886 tcagtctcttaactattaaatgtattaatctggtcatgtaaatactcttc 32959935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 7338164 - 7338302
Alignment:
Q  1 cttattttttccttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaact 100  Q
    ||||||||||| ||||||||||| || |||||| ||||||||||||||||| ||||||||||| ||||||||||| |   |||| |||||| ||||||||    
T  7338164 cttattttttc-ttctcacttcaatcccttaacaattaaatgtgtcaatttagtcctgtaagttctcttccgtttgcccggttgatcctttttgttaact 7338262  T
Q  101 tttttcaaaaaacgttaactctgaacatgtggcactccag 140  Q
    |||||||||||||||||||| || | ||||||||||||||    
T  7338263 tttttcaaaaaacgttaactatgtatatgtggcactccag 7338302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 47928503 - 47928469
Alignment:
Q  23 agtctcttaactattaaatgtgtcaatttggtcct 57  Q
    ||||||||||||||||||||| |||||||||||||    
T  47928503 agtctcttaactattaaatgtttcaatttggtcct 47928469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 48866174 - 48866272
Alignment:
Q  13 ttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaacttttttcaaaaa 111  Q
    |||||| || |||| || ||||||||| ||||||||||||||||| |||||  ||||||||||||| |  ||||||| || ||||  ||||||||||||    
T  48866174 ttctcagtttagtccctgaactattaagtgtgtcaatttggtcctataagtcttcttccgtttactaatatggtcctctccgttagtttttttcaaaaa 48866272  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 2224975 - 2225012
Alignment:
Q  83 tggtcctttctgttaacttttttcaaaaaacgttaact 120  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  2224975 tggtcctttctgttaatttttatcaaaaaacgttaact 2225012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 7983763 - 7983713
Alignment:
Q  28 cttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttact 78  Q
    |||||||||||| ||||||||||||||||| |||||  ||| |||||||||    
T  7983763 cttaactattaagtgtgtcaatttggtcctataagtcttctaccgtttact 7983713  T

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