View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_high_4 (Length: 493)
Name: NF18819_high_4
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 299
Target Start/End: Original strand, 43810172 - 43810455
Alignment:
| Q |
16 |
aacctgtgatatctagtcaatctacctctaatagtgttattttgtcttttcctcaaaaaggacttaatcacgattacagttatcagagtatcttctgcca |
115 |
Q |
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| T |
43810172 |
aacctgtgatatctagtcaatctacctctaatagtgttattttgtcttttcctcaaaaaggacttaatcacgattacagttatcagagtatcttctgcca |
43810271 |
T |
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| Q |
116 |
ccattggctatactcggtatccaacaaagatcttgacttagacaaagtctactttgtcttctcatatccatgaggctcgggtgtttaaagtcttttcata |
215 |
Q |
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| T |
43810272 |
ccattggctatactcggtatccaacaaagatcttgacttagacaaagtctactttgtcttctcatatccatgaggctcgggtgtttaaagtcttttcata |
43810371 |
T |
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| Q |
216 |
ctacccttttcaacaaaggttgttgccactaatgggtgttttacattcaaatgatacaaaatcattgttaggatgattctctaa |
299 |
Q |
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| T |
43810372 |
ctacccttttcaacaaaggttgttgccactagtgggtgttttacattcaaatgatacaaaaccattgttaggatgattctctaa |
43810455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 298 - 396
Target Start/End: Original strand, 43810485 - 43810582
Alignment:
| Q |
298 |
aattcaagtgtactgcgactgcttgattgatttacattattgatctaattaatctcattttgataggatttacagtgattgtcctattaaggttcttgg |
396 |
Q |
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| T |
43810485 |
aattcaagtgtactgcgactgcttgattgatttacattat-gatctaattaatctcattttgataggatttacagtgattgtcctattaatgttcttgg |
43810582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 246
Target Start/End: Complemental strand, 34426497 - 34426402
Alignment:
| Q |
151 |
acttagacaaagtctactttgtcttctcatatccatgaggctcgggtgtttaaagtcttttcatactacccttttcaacaaaggttgttgccacta |
246 |
Q |
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| T |
34426497 |
acttagacaaagcctactatgttttctaatatccacggggtttgagtgtttaaagtctcttcatacgatcctattgaataaaggttgttgtcacta |
34426402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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