View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_high_42 (Length: 244)
Name: NF18819_high_42
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 38629874 - 38629638
Alignment:
| Q |
1 |
cgggttcatagttcatacaagtatttcctgtaaaaatgttcttgcaatcggactagttctactgcatacaatttgaagaggtcagctgaataattagtca |
100 |
Q |
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| T |
38629874 |
cgggttcatagttcatacaagtatttcctgtaaaaatgttcttgcaatcagactagttctactgcatacaatttgaagaggtctgccgaataattagtca |
38629775 |
T |
|
| Q |
101 |
ccaaataagaaccaaatctgtaggcagtaaatattgaaatgatccaatccaacatatataattcgaagagtaattcactatttcatgttctattacactg |
200 |
Q |
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| T |
38629774 |
ccaaataagaaccaaatctataggcagtaaatattgaaatgatccaatccaacatatataattcgaagagtaattcactatttcatgttctattacactg |
38629675 |
T |
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| Q |
201 |
gattgcacatatacccttgaattgatgaagagtataa |
237 |
Q |
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| T |
38629674 |
gattgcacatatacccttgaattgatgaagagtataa |
38629638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 38696449 - 38696616
Alignment:
| Q |
65 |
catacaatttgaagaggtcagctgaataattagtcaccaaataagaaccaaatctgtaggcagtaaatattgaaatgatccaatccaacatatataattc |
164 |
Q |
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|||||||||||||||||||| ||| ||||| ||||| || || ||||||||||||| | ||||||| |||||| | |||||||| | ||||||| |
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| T |
38696449 |
catacaatttgaagaggtcaactggataataagtcatca---aacaaccaaatctgtaaggagtaaattttgaaagg-----atccaacagacataattc |
38696540 |
T |
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| Q |
165 |
gaag---agtaattcacta---tttcatgttctattacactggattgcacatatacccttgaattgatgaagagta |
234 |
Q |
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| T |
38696541 |
aaagagtagtaattcactaccttttcacgttttattacacttgatttcacatatacacttgaattgataaagagta |
38696616 |
T |
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