View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18819_high_47 (Length: 238)

Name: NF18819_high_47
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18819_high_47
NF18819_high_47
[»] chr5 (1 HSPs)
chr5 (9-219)||(13674822-13675034)
[»] chr8 (1 HSPs)
chr8 (139-218)||(37233282-37233361)
[»] chr4 (2 HSPs)
chr4 (168-217)||(18905517-18905566)
chr4 (132-206)||(588543-588617)
[»] chr2 (2 HSPs)
chr2 (132-208)||(18690529-18690605)
chr2 (3-63)||(41755265-41755327)
[»] chr1 (1 HSPs)
chr1 (128-195)||(11237450-11237517)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 13675034 - 13674822
Alignment:
Q  9 tataaaatacaacaaagaaccttgaacatttatccagtagatttg--taccaagttagacgcaattcactacaacgggagaagatcaatatgtccaggtt 106  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13675034 tataaaatacgacaaagaaccttgaacatttatctagtagatttgaataccaagttagacgcaattcactacaacgggagaaaatcaatatgtccaggtt 13674935  T
Q  107 tcaagttgatatctcactgtctgggttgaagaatcaactggactaaatcaattgttgacttaaccacaaagatacaaggagagtggacattgttgagtat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13674934 tcaagttgatatctcactgtctgggttgaagaatcaactggactaaatcaattgttgacttaaccacaaagatacaaggagagtggacattgttgagtat 13674835  T
Q  207 catcatccatcgt 219  Q
    |||||||||||||    
T  13674834 catcatccatcgt 13674822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 37233282 - 37233361
Alignment:
Q  139 atcaactggactaaatcaattgttgacttaaccacaaagatacaaggagagtggacattgttgagtatcatcatccatcg 218  Q
    |||||||||| |||||||| ||  ||||| |||||| ||| |||||||| ||||||| ||||||||||| || |||||||    
T  37233282 atcaactggattaaatcaactggcgacttgaccacatagacacaaggagggtggacaatgttgagtatcgtcgtccatcg 37233361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 18905566 - 18905517
Alignment:
Q  168 aaccacaaagatacaaggagagtggacattgttgagtatcatcatccatc 217  Q
    ||||||||||| |||||||  |||||||||||||||||||||| ||||||    
T  18905566 aaccacaaagacacaaggatggtggacattgttgagtatcatcgtccatc 18905517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 588617 - 588543
Alignment:
Q  132 ttgaagaatcaactggactaaatcaattgttgacttaaccacaaagatacaaggagagtggacattgttgagtat 206  Q
    |||||| |||| || ||||||||||||  |||||||||||||| ||| | |||||  ||||||| ||||||||||    
T  588617 ttgaaggatcatctagactaaatcaatcattgacttaaccacatagacataaggaaggtggacaatgttgagtat 588543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 18690605 - 18690529
Alignment:
Q  132 ttgaagaatcaactggactaaatcaattgttgacttaaccacaaagatacaaggagagtggacattgttgagtatca 208  Q
    |||||| ||||| ||||| |||| ||   |||||| ||||||||||| |||||||| ||||||| ||||||||||||    
T  18690605 ttgaaggatcaattggaccaaattaaccattgactcaaccacaaagacacaaggagggtggacagtgttgagtatca 18690529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 41755265 - 41755327
Alignment:
Q  3 atttgttataaaatacaacaaagaaccttgaacatttatccagtagatttg--taccaagtta 63  Q
    ||||||||||||| ||||||||||||| |||||| ||||| |||| |||||  ||||||||||    
T  41755265 atttgttataaaagacaacaaagaaccatgaacacttatcaagtaaatttgaataccaagtta 41755327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 11237517 - 11237450
Alignment:
Q  128 tgggttgaagaatcaactggactaaatcaattgttgacttaaccacaaagatacaaggagagtggaca 195  Q
    |||||||||| ||||  ||||  ||||||||||| |||| ||||||||||| |||||||| |||||||    
T  11237517 tgggttgaaggatcagttggatcaaatcaattgtcgactcaaccacaaagacacaaggagggtggaca 11237450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University