View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_high_5 (Length: 473)
Name: NF18819_high_5
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 343 - 463
Target Start/End: Original strand, 19788906 - 19789026
Alignment:
| Q |
343 |
caagcaactgaggataaccatccaatgttgatgtcccgtggccatgtcctctgtgatcagtctatcttgaaaatgtccatgaacagcacagaagcgttta |
442 |
Q |
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| T |
19788906 |
caagcaactgaggataaccatccaatgttgttgtcctgtggccatgtcctctgtgatcagtctatcttgaaaatgtccatgaacagcacagaagcgttta |
19789005 |
T |
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| Q |
443 |
agttcccatattgtccctttg |
463 |
Q |
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| T |
19789006 |
agttcccatattgtccctttg |
19789026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 219 - 344
Target Start/End: Original strand, 19788745 - 19788870
Alignment:
| Q |
219 |
tgactgtggccacagggatcctgtttttgccagctctccttaaatttatgaatatcatgtcaggaaagcagaaatggcagtcatgaaccttttaacagtg |
318 |
Q |
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| T |
19788745 |
tgactgtggcagcaggggtcctgtttttgccagctctccttaaatttatgaatatcatgtcaggaaagcagaaatggcagtcatgagccttttaacagta |
19788844 |
T |
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| Q |
319 |
gtaattgagactgacaaagaattcca |
344 |
Q |
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| T |
19788845 |
gcaattgagactgacaaagaattcca |
19788870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 19788282 - 19788465
Alignment:
| Q |
17 |
attattgccaaccatttttatcaccgggactattttgatgcaagggacca-ttttttaagtgcagttggagagcctgagtctgccgcaa-tatgaaatat |
114 |
Q |
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| T |
19788282 |
attattgccaaccatttttttcaccaggaccattttgatgtaagggaccatttttttaagggcagttggagagcccgagtctgccgcaattatgaaatat |
19788381 |
T |
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| Q |
115 |
ccattcgtagaaatgtataaaatacttcaagccatgcagaatcagaacctggaggacccagcccttgattgggctgccactaattctgacacttgct |
211 |
Q |
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| T |
19788382 |
ccattcatagaaat------act--ttcaa---atg--gaatcagaacctggaggacccagccctcaattaggctgccgctaattctgacacttgct |
19788465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 343 - 463
Target Start/End: Original strand, 28173292 - 28173412
Alignment:
| Q |
343 |
caagcaactgaggataaccatccaatgttgatgtcccgtggccatgtcctctgtgatcagtctatcttgaaaatgtccatgaacagcacagaagcgttta |
442 |
Q |
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|||||||||||||| |||| |||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| ||| |||||| ||| |||| |
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| T |
28173292 |
caagcaactgaggagaaccctccaatgttgatgtcctgtggccatgtcctctgtaagcagtctatcttgaaaatgtccaagaatagcacaaaagtattta |
28173391 |
T |
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| Q |
443 |
agttcccatattgtccctttg |
463 |
Q |
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||| ||| ||||||||||||| |
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| T |
28173392 |
agtgcccgtattgtccctttg |
28173412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 28172647 - 28172830
Alignment:
| Q |
20 |
attgccaaccatttttatcaccgggactattttgatgcaagggaccattttttaagtgcagttggagagcctgagtctgccgcaa-tatgaaatatccat |
118 |
Q |
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||||||||||||||||||| || || | ||| |||| | ||||||||||| | |||||||| || |||||||| ||||| |||| |||||||| ||||| |
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| T |
28172647 |
attgccaaccatttttatcgccagggccttttcgatgtaggggaccattttcttagtgcagtcggtgagcctgaatctgctgcaagtatgaaatctccat |
28172746 |
T |
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| Q |
119 |
tcgtagaaatgtataaaatacttcaagccatgcagaatcagaacctggaggacccagcccttgattgggctgccactaattctgaca |
205 |
Q |
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| T |
28172747 |
tcttggagatgtatcaaatactcgaagccatgcagaatcagaacctggag---ccagccctcaactgggctgcgactaattctgaca |
28172830 |
T |
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