View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_1 (Length: 772)
Name: NF18819_low_1
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 699; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 20 - 767
Target Start/End: Complemental strand, 33894353 - 33893606
Alignment:
| Q |
20 |
gttgcggactccaggttcgtctggtgcaaaccaaaatgtgctggataagacaatggaattgactcctgcttctcggcgaaggatgagagagttaccggag |
119 |
Q |
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| T |
33894353 |
gttgcggactccaggttcgtctggtgcgaaccaaaatgtgccggataagacaatggaattgactcctgcttctcggcgaaggatgagagagttaccggag |
33894254 |
T |
|
| Q |
120 |
aagcagatgttggagaaagtggctacgattctgcctgagtctgctctttatactcaattgcttgattttgaggctcagatggatgcggcattggctaaga |
219 |
Q |
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| T |
33894253 |
aagcagatgttggagaaagtggctacgattctgcctgagtctgctctttatactcaattgcttgattttgaggctcagatggatgctgcattggctaaga |
33894154 |
T |
|
| Q |
220 |
gaaagcttggtatgcaggaggctattagaagtnnnnnnnatgttcagaaaactctgagagtttatgtgtttaatacgttctcgaagcacacaaaaactga |
319 |
Q |
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| T |
33894153 |
gaaagcttggtatgcaggaggctattagaagtcccccccatgttcagaaaactctgagagtttatgtgtttaatacgttctcgaagcacacaaaaactga |
33894054 |
T |
|
| Q |
320 |
ctctgaaaaggataaaactgttgaggaatcttcttggtctttgaagataattggaagggtattggaagatgggaacgatcttttgtctggaattttgcag |
419 |
Q |
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| T |
33894053 |
ctctgaggaggataaaactgttgaggaatcttcttggtctttgaagataattggaagggtattggaagatgggaacgatcttttgtctggaattttgcag |
33893954 |
T |
|
| Q |
420 |
agatcaagtccttctgacacaaagttttctgattttttcaagaaaattactatatgcttggatcagaacctttatcctgaaaatcacattattgtgtggg |
519 |
Q |
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| T |
33893953 |
agatcaagtccttctgacacaaagttttctgattttttcaagaaaattactatatgcttggatcagaacctttatcctgaaaatcacattattgtgtggg |
33893854 |
T |
|
| Q |
520 |
atagtgctcattcgcctaaacaacaggatggctttgagattaagagaaaaggagacaaagaattcactgcagttatcaaattagatttgaaatattcacc |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33893853 |
atagtgctcattcgcctaaacaacaggatggctttgaggttaagagaaaaggagacaaagaattcactgcagttatcaaattagatttgaaatattcacc |
33893754 |
T |
|
| Q |
620 |
tgagaagttcatggtctcagcaccattgtctagactcttaggggttgaggtcgagactcgcccgagaataatagctgctctttggcattatgtgaagtcc |
719 |
Q |
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| T |
33893753 |
tgagaagttcatggtctcagcaccattgtctagactcttaggggttgaggtcgagactcgcccgagaataatagctgctctttggcattatgtgaagtcc |
33893654 |
T |
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| Q |
720 |
aggaagctacaatgtgccgatgaaccttcattcttcatctgtgctcct |
767 |
Q |
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| T |
33893653 |
aggaagctacaatgtgccgatgaaccttcattcttcatctgtgatcct |
33893606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 508 - 727
Target Start/End: Complemental strand, 42820879 - 42820660
Alignment:
| Q |
508 |
ttattgtgtgggatagtgctcattcgcctaaacaacaggatggctttgagattaagagaaaaggagacaaagaattcactgcagttatcaaattagattt |
607 |
Q |
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||||||||||||||||||||| ||||||| || || ||||| |||||| | ||||| ||||| |||||||| || ||||||||||| | |||| | |
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| T |
42820879 |
ttattgtgtgggatagtgctcgttcgcctgtgcagcaagatggttttgaggtgaagaggaaaggggacaaagagtttactgcagttattaggttaggagt |
42820780 |
T |
|
| Q |
608 |
gaaatattcacctgagaagttcatggtctcagcaccattgtctagactcttaggggttgaggtcgagactcgcccgagaataatagctgctctttggcat |
707 |
Q |
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||| || || || |||||||| ||||| || |||| ||| ||| | | |||||| ||||| | || || || || || ||||| |||||||||||| | |
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| T |
42820779 |
gaattactcgccggagaagtttatggtttcgacaccgttggctaaagttttagggattgagtttgatacccgtcctaggataatggctgctctttggaac |
42820680 |
T |
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| Q |
708 |
tatgtgaagtccaggaagct |
727 |
Q |
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|||||||||| ||||||||| |
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| T |
42820679 |
tatgtgaagttcaggaagct |
42820660 |
T |
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