View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_11 (Length: 429)
Name: NF18819_low_11
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Original strand, 26734519 - 26734931
Alignment:
| Q |
17 |
acaagcttcgcggttcaattccagctttcatcggcgatcttcctaacctcgaaacgcttcaggtttgggaaaacaatttctcttttgtattgccgcagaa |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26734519 |
acaagcttcgcggttcaattccagcgttcatcggcgatcttcctaacctcgaaacgcttcaggtttgggaaaacaatttctcttttgtattgccgcagaa |
26734618 |
T |
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| Q |
117 |
tctcggttcaaacggaaagttcatatactttgacgttacgaagaatcacctcaccggattgatcccaccggagttatgcaaatcaaagaagttgaaaacg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26734619 |
tctcggttcaaacggaaagttcatatactttgacgttacgaagaatcacctcaccggattgatcccaccggagttatgcaaatcaaagaagttgaaaacg |
26734718 |
T |
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| Q |
217 |
tttatcgttactgacaacttcttccgcggtccaatacctaacggaattggcccgtgtaagtcacttgaaaaaatcagagtggctaataactacttggacg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26734719 |
tttatcgttactgacaacttcttccgcggtccaatacctaacggaattggcccgtgtaagtcacttgaaaaaatcagagtggctaataactacttggacg |
26734818 |
T |
|
| Q |
317 |
gcccggtcccaccggggatctttcagttgccttctgtacagataatagagcttggaaataaccgttttaacggccaactaccaacggagatttctggcaa |
416 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26734819 |
gcccggtcccaccggggatttttcagttgccttctgtacagataatagagcttggaaataaccgttttaacggccaactaccaacggagatttctggcaa |
26734918 |
T |
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| Q |
417 |
ttctctcgggaat |
429 |
Q |
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| T |
26734919 |
ttctctcgggaat |
26734931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 427
Target Start/End: Original strand, 26726205 - 26726615
Alignment:
| Q |
17 |
acaagcttcgcggttcaattccagctttcatcggcgatcttcctaacctcgaaacgcttcaggtttgggaaaacaatttctcttttgtattgccgcagaa |
116 |
Q |
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|||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
26726205 |
acaagctttgcggttcaattccagcgttcgtcggtgatcttcctaacctcgaaacgcttcaggtttgggacaacaatttctcttctgtattgccgcagaa |
26726304 |
T |
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| Q |
117 |
tctcggttcaaacggaaagttcatatactttgacgttacgaagaatcacctcaccggattgatcccaccggagttatgcaaatcaaagaagttgaaaacg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26726305 |
tctcggttcaaacggaaagttcatatactttgacgttacgaagaatcacctcaccggattgatcccaccggagttatgcaaatcgaagaagttgaaaacg |
26726404 |
T |
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| Q |
217 |
tttatcgttactgacaacttcttccgcggtccaatacctaacggaattggcccgtgtaagtcacttgaaaaaatcagagtggctaataactacttggacg |
316 |
Q |
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||||||||| |||||||||| || |||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26726405 |
tttatcgtttctgacaactttctcagcggtccaatacctaacggaatcggtgcgtgtaagtcacttgaaaaaatcagagtcgctaataactacttggacg |
26726504 |
T |
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| Q |
317 |
gcccggtcccaccggggatctttcagttgccttctgtacagataatagagcttggaaataaccgttttaacggccaactaccaacggagatttctggcaa |
416 |
Q |
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||| |||||||||||| || |||||||||||||||||| ||| || |||||| ||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
26726505 |
gcctggtcccaccgggaatttttcagttgccttctgtaacgatgatggagcttagaaataaccgttttaacggccaactaccatcggagatttccggcaa |
26726604 |
T |
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| Q |
417 |
ttctctcggga |
427 |
Q |
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||||||||||| |
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| T |
26726605 |
ttctctcggga |
26726615 |
T |
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