View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18819_low_13 (Length: 403)

Name: NF18819_low_13
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18819_low_13
NF18819_low_13
[»] chr4 (12 HSPs)
chr4 (4-217)||(1549629-1549842)
chr4 (216-388)||(1548609-1548781)
chr4 (6-121)||(1553845-1553960)
chr4 (216-268)||(1553052-1553104)
chr4 (305-384)||(1552959-1553038)
chr4 (257-362)||(1545556-1545661)
chr4 (227-373)||(12121657-12121803)
chr4 (222-367)||(1489567-1489712)
chr4 (260-332)||(558284-558356)
chr4 (234-338)||(55505340-55505444)
chr4 (298-338)||(640739-640779)
chr4 (222-342)||(1517730-1517850)
[»] chr1 (1 HSPs)
chr1 (245-338)||(43633968-43634061)
[»] chr5 (1 HSPs)
chr5 (227-338)||(12845346-12845457)
[»] chr8 (2 HSPs)
chr8 (230-338)||(32151057-32151165)
chr8 (216-268)||(18315519-18315571)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 1549842 - 1549629
Alignment:
Q  4 tcaattaattagttcagttcgaacaacgatgtatgaaatttcaaatcatatgcttatccacactacaactgaatctcttacatatagtacataaatcaat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1549842 tcaattaattagttcagttcgaacaacgatgtatgaaatttcaaatcatacgcttatccacactacaactgaatctcttacatatagtacataaatcaat 1549743  T
Q  104 cataaaactctcttgcatnnnnnnntatgggtatgtctgtgttgtcaatcgtagatagcgggacgtagcggcaaacctaaaaaatgttatagcggtatag 203  Q
    || |||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1549742 cagaaaactctcttgcataaaaaaatatgggtatgtttgtgttgtcaatcgtagatagcgggacgtagcggcaaacctaaaaaatgttatagcggtatag 1549643  T
Q  204 aagactgcggatga 217  Q
    ||||||||||||||    
T  1549642 aagactgcggatga 1549629  T

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Target: chr4; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 216 - 388
Target Start/End: Complemental strand, 1548781 - 1548609
Alignment:
Q  216 gagtagttttcgaatactagcaaacaagacatccttgatgcgagaagagttccatctcagtgtcactaaaatgacaaagagctggagttgttatctttct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548781 gagtagttttcgaatactagcaaacaagacatccttgatgcgagaagagttccatctcagtgtcactaaaatgacaaagagctggagttgttatctttct 1548682  T
Q  316 caatgatggtcttgaaaataccaatgaagcgacaacatcatcatgcaattgaaaacaaccttccaaattaatt 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548681 caatgatggtcttgaaaataccaatgaagcgacaacatcatcatgcaattgaaaacaaccttccaaattaatt 1548609  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 1553960 - 1553845
Alignment:
Q  6 aattaattagttcagttcgaacaacgatgtatgaaatttcaaatcatatgcttatccacactacaactgaatctcttacatatagtacataaatcaatca 105  Q
    ||||||||||| ||| ||||  ||  |||||||||||||  ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  1553960 aattaattagtgcagatcgacaaataatgtatgaaattttgaatcatatgcttatccacactaccactgaatctctaacatatattacataaatcaatca 1553861  T
Q  106 taaaactctcttgcat 121  Q
    || |||||||||||||    
T  1553860 tataactctcttgcat 1553845  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 1553104 - 1553052
Alignment:
Q  216 gagtagttttcgaatactagcaaacaagacatccttgatgcgagaagagttcc 268  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1553104 gagtagttttggaatactagcaaacaagacatccttgatgcgagaagagttcc 1553052  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 384
Target Start/End: Complemental strand, 1553038 - 1552959
Alignment:
Q  305 gttatctttctcaatgatggtcttgaaaataccaatgaagcgacaacatcatcatgcaattgaaaacaaccttccaaatt 384  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||| || || || || |||||||| ||||||    
T  1553038 gttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaatt 1552959  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 257 - 362
Target Start/End: Original strand, 1545556 - 1545661
Alignment:
Q  257 gagaagagttccatctcagtgtcactaaaatgacaaagagctggagttgttatctttctcaatgatggtcttgaaaataccaatgaagcgacaacatcat 356  Q
    |||||||||||| |||||||||||||||||||| || |||||||||  |||||  ||||||||||||| ||||| ||||| ||| |||| | ||||| |     
T  1545556 gagaagagttccctctcagtgtcactaaaatgataaggagctggagcagttatacttctcaatgatggccttgataatactaataaagcaataacattag 1545655  T
Q  357 catgca 362  Q
    ||||||    
T  1545656 catgca 1545661  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 373
Target Start/End: Complemental strand, 12121803 - 12121657
Alignment:
Q  227 gaatactagcaaacaagacatccttgatgcgagaagagttccatctcagtgtcactaaaatgacaaagagctggagttgttatctttctcaatgatggtc 326  Q
    ||||||||||||||||  || |||||| | || ||||||||||||||  |||   | ||| || || || |||||||||| | ||||||||||||||| |    
T  12121803 gaatactagcaaacaatgcaaccttgacgtgataagagttccatctccttgttgttgaaacgataacgatctggagttgtaaactttctcaatgatggcc 12121704  T
Q  327 ttgaaaataccaatgaagcgacaacatcatcatgcaattgaaaacaa 373  Q
    ||||||||| |||||| || | |||||||  ||||| ||||| ||||    
T  12121703 ttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaa 12121657  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 367
Target Start/End: Complemental strand, 1489712 - 1489567
Alignment:
Q  222 ttttcgaatactagcaaacaagacatccttgatgcgagaagagttccatctcagtgtcactaaaatgacaaagagctggagttgttatctttctcaatga 321  Q
    |||| ||||||||||||||||  ||||||||| | || ||||| ||||||||  |||| || || ||| ||  |  |||||||| || |||||| || ||    
T  1489712 ttttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaattgataatcatatggagttgataactttcttaacga 1489613  T
Q  322 tggtcttgaaaataccaatgaagcgacaacatcatcatgcaattga 367  Q
    ||| |||||||||| |||||| || | |||||||||||||| ||||    
T  1489612 tggccttgaaaatatcaatgaggcaagaacatcatcatgcacttga 1489567  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 558284 - 558356
Alignment:
Q  260 aagagttccatctcagtgtcactaaaatgacaaagagctggagttgttatctttctcaatgatggtcttgaaa 332  Q
    ||||| ||||||||  |||| || ||| ||||| ||  ||||||||||| |||||||||||||||||||||||    
T  558284 aagagctccatctctctgtcgctgaaacgacaaggatatggagttgttaactttctcaatgatggtcttgaaa 558356  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 338
Target Start/End: Complemental strand, 55505444 - 55505340
Alignment:
Q  234 agcaaacaagacatccttgatgcgagaagagttccatctcagtgtcactaaaatgacaaagagctggagttgttatctttctcaatgatggtcttgaaaa 333  Q
    |||||||||  ||||||||| || ||||||||| | |||    |||||| |||||| ||  || ||| | ||||||||||||||||||||| ||||||||    
T  55505444 agcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaa 55505345  T
Q  334 tacca 338  Q
    |||||    
T  55505344 tacca 55505340  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 640739 - 640779
Alignment:
Q  298 tggagttgttatctttctcaatgatggtcttgaaaatacca 338  Q
    |||||||  |||||||||||||||||| |||||||||||||    
T  640739 tggagttactatctttctcaatgatggccttgaaaatacca 640779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 342
Target Start/End: Complemental strand, 1517850 - 1517730
Alignment:
Q  222 ttttcgaatactagcaaacaagacatccttgatgcgagaagagttccatctcagtgtcactaaaatgacaaagagctggagttgttatctttctcaatga 321  Q
    |||| ||||||||| |||||  |||||||||  || | || |||||||||||  |||| || ||| || || || ||||||||||||  ||| |||||||    
T  1517850 ttttagaatactagtaaacattacatccttggcgcaataaaagttccatctccttgtcgctgaaacgataatgatctggagttgttacatttttcaatga 1517751  T
Q  322 tggtcttgaaaataccaatga 342  Q
    ||| ||||| |||| ||||||    
T  1517750 tggccttgacaatatcaatga 1517730  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 338
Target Start/End: Original strand, 43633968 - 43634061
Alignment:
Q  245 catccttgatgcgagaagagttccatctcagtgtcactaaaatgacaaagagctggagttgttatctttctcaatgatggtcttgaaaatacca 338  Q
    |||||||||||| ||||||||| | |||   ||||||| |||||| || ||| ||| | | ||||||||||||||||||| |||||||||||||    
T  43633968 catccttgatgcaagaagagtttcttctttttgtcactcaaatgaaaacgaggtggcgctattatctttctcaatgatggccttgaaaatacca 43634061  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 338
Target Start/End: Original strand, 12845346 - 12845457
Alignment:
Q  227 gaatactagcaaacaagacatccttgatgcgagaagagttccatctcagtgtcactaaaatgacaaagagctggagttgttatctttctcaatgatggtc 326  Q
    ||||||||| ||||||| ||||| |||||| ||||||||||| | |||   ||||||  |||| ||| ||  ||| ||||||||||||| |||||||| |    
T  12845346 gaatactagaaaacaaggcatccatgatgcaagaagagttccctttcatgatcactaggatgataaaaaggaggaattgttatctttcttaatgatggcc 12845445  T
Q  327 ttgaaaatacca 338  Q
    |||||| |||||    
T  12845446 ttgaaagtacca 12845457  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 32151057 - 32151165
Alignment:
Q  230 tactagcaaacaagacatccttgatgcgagaagagttccatctcagtgtcactaaaatgacaaagagctggagttgttatctttctcaatgatggtcttg 329  Q
    |||||| ||||||| ||||| ||| || ||||||||| | | |   ||||||| |||| | || ||| |||||  |||||||||||||||||||| ||||    
T  32151057 tactaggaaacaaggcatccatgacgcaagaagagtttcctttttttgtcactgaaatcataacgaggtggagcagttatctttctcaatgatggccttg 32151156  T
Q  330 aaaatacca 338  Q
    |||||||||    
T  32151157 aaaatacca 32151165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 18315571 - 18315519
Alignment:
Q  216 gagtagttttcgaatactagcaaacaagacatccttgatgcgagaagagttcc 268  Q
    |||||||||  |||| |||||||||||| |||| |||| ||||||||||||||    
T  18315571 gagtagtttgagaatgctagcaaacaaggcatctttgacgcgagaagagttcc 18315519  T

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