View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_16 (Length: 375)
Name: NF18819_low_16
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 4610343 - 4610693
Alignment:
| Q |
18 |
tttcagtaattcttctacgcgtcctccaaacacgccatcaaagagtgtttgcggtggtgacatctttagaccttattattactcaaattttccgaactat |
117 |
Q |
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| T |
4610343 |
tttcagtaattcttctacgcgtcctccaaacacgccatcaaagagtgtttgcggcggtgacatctttagaccttattattactcaaattttccgaactat |
4610442 |
T |
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| Q |
118 |
atggctaatactcagtcatttaaggcaaaattaaggtctcatagtgctcctaaacaaagacctgaagtcaagaaaaggctttcactcaatgaaatgatgt |
217 |
Q |
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| T |
4610443 |
atggctaatactcagtcatttaaggcaaaattaaggtctcatagtgctcctaaacaaagacctgaagtcaagaaaaggctttcactcaatgaaatgatgt |
4610542 |
T |
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| Q |
218 |
ctgcgagaaacagtatcagtggtgttagaatgcaaaaaccttcatccaattttcagacaaaacaagaagatgaagaatcatggaattcttgacattttta |
317 |
Q |
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| T |
4610543 |
ctgcgagaaacagtatcagtggtgttagaatgcaaaaaccttcatccaattttcagacaaaacaagaagatgaagaatcatggaattcttgacattttta |
4610642 |
T |
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| Q |
318 |
gttgtcacagtattggagaaatttgagaggaaactaaagatgtgatgatgt |
368 |
Q |
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| T |
4610643 |
gttgtcacagtattggagaaatttgagaggaaactaaagatgtaatgatgt |
4610693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 43088909 - 43088844
Alignment:
| Q |
118 |
atggctaatactcagtcatttaaggcaaaattaaggtctcatagtgctcctaaacaaagacctgaa |
183 |
Q |
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| T |
43088909 |
atggctaatacacagtcttttaaggctaaattgaggtctcatagtgctccaaagcaacgacctgaa |
43088844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 43314179 - 43314077
Alignment:
| Q |
96 |
ttactcaaattttccgaactatatggctaatactcagtcatttaaggcaaaa---ttaaggtctcatagtgctcctaaacaaagacctgaagtcaagaaa |
192 |
Q |
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||||||||||||||| ||||| |||||||||||||| |||| ||||| || | |||||||||| |||||||| || ||||||||||| |||||||| |
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| T |
43314179 |
ttactcaaattttcctaactacatggctaatactcattcatctaagggaagagtggtaaggtctcacagtgctccaaagcaaagacctgacctcaagaaa |
43314080 |
T |
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| Q |
193 |
agg |
195 |
Q |
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||| |
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| T |
43314079 |
agg |
43314077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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