View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18819_low_17 (Length: 370)

Name: NF18819_low_17
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18819_low_17
NF18819_low_17
[»] chr5 (16 HSPs)
chr5 (16-289)||(23178090-23178365)
chr5 (289-351)||(23188606-23188668)
chr5 (136-242)||(23223552-23223658)
chr5 (313-350)||(31920061-31920098)
chr5 (310-351)||(38874672-38874713)
chr5 (312-351)||(38874338-38874377)
chr5 (313-351)||(21039866-21039904)
chr5 (313-351)||(25962803-25962841)
chr5 (313-351)||(31312789-31312827)
chr5 (313-350)||(4413928-4413965)
chr5 (313-350)||(12148245-12148282)
chr5 (313-350)||(25963140-25963177)
chr5 (313-342)||(34648737-34648766)
chr5 (313-350)||(37082293-37082330)
chr5 (311-351)||(4221735-4221775)
chr5 (313-345)||(37217544-37217576)
[»] chr2 (11 HSPs)
chr2 (311-350)||(26498508-26498547)
chr2 (313-350)||(19272663-19272700)
chr2 (311-351)||(33563731-33563771)
chr2 (313-351)||(7318403-7318441)
chr2 (313-351)||(11115261-11115299)
chr2 (313-351)||(16139134-16139172)
chr2 (313-351)||(32596406-32596444)
chr2 (313-351)||(36525610-36525648)
chr2 (313-350)||(38127764-38127801)
chr2 (311-351)||(5558221-5558261)
chr2 (311-351)||(17920090-17920130)
[»] chr7 (9 HSPs)
chr7 (313-351)||(35158184-35158222)
chr7 (315-351)||(10975860-10975896)
chr7 (313-351)||(20164441-20164479)
chr7 (313-351)||(21444201-21444239)
chr7 (313-351)||(47973876-47973914)
chr7 (313-350)||(17167805-17167842)
chr7 (313-350)||(24478025-24478062)
chr7 (315-351)||(31387565-31387601)
chr7 (313-345)||(41380728-41380760)
[»] chr3 (8 HSPs)
chr3 (313-351)||(43110725-43110763)
chr3 (310-342)||(6473946-6473978)
chr3 (313-351)||(26769922-26769960)
chr3 (305-351)||(31073993-31074038)
chr3 (313-351)||(44986759-44986797)
chr3 (313-350)||(23626256-23626293)
chr3 (311-351)||(7272831-7272871)
chr3 (314-350)||(14004601-14004637)
[»] chr8 (9 HSPs)
chr8 (310-351)||(3448890-3448931)
chr8 (313-351)||(4335000-4335038)
chr8 (313-351)||(13572541-13572579)
chr8 (313-351)||(25653705-25653743)
chr8 (313-351)||(38687529-38687567)
chr8 (313-351)||(38711958-38711996)
chr8 (313-351)||(39301882-39301920)
chr8 (313-350)||(19152461-19152498)
chr8 (313-350)||(34227328-34227365)
[»] chr6 (9 HSPs)
chr6 (313-350)||(5832340-5832377)
chr6 (306-351)||(33552788-33552833)
chr6 (313-344)||(11425793-11425824)
chr6 (313-351)||(10545832-10545870)
chr6 (309-351)||(30381563-30381605)
chr6 (313-350)||(8237995-8238032)
chr6 (313-350)||(18591122-18591159)
chr6 (313-341)||(9676566-9676594)
chr6 (307-351)||(18028904-18028948)
[»] chr4 (18 HSPs)
chr4 (313-350)||(18509984-18510021)
chr4 (315-351)||(39133419-39133455)
chr4 (313-351)||(14574944-14574983)
chr4 (313-351)||(16588982-16589020)
chr4 (313-351)||(19909343-19909381)
chr4 (313-351)||(31592530-31592568)
chr4 (313-351)||(40450259-40450297)
chr4 (313-351)||(51902047-51902085)
chr4 (313-350)||(14121580-14121617)
chr4 (318-351)||(14946292-14946325)
chr4 (313-350)||(17494569-17494606)
chr4 (313-350)||(29104160-29104197)
chr4 (313-350)||(31226518-31226555)
chr4 (314-351)||(53069613-53069650)
chr4 (306-350)||(3652265-3652309)
chr4 (313-345)||(6463816-6463848)
chr4 (313-345)||(27627006-27627038)
chr4 (314-350)||(49300739-49300775)
[»] scaffold0005 (1 HSPs)
scaffold0005 (313-351)||(242392-242431)
[»] scaffold0004 (1 HSPs)
scaffold0004 (313-351)||(212514-212552)
[»] chr1 (10 HSPs)
chr1 (313-351)||(13790303-13790341)
chr1 (313-351)||(26399192-26399230)
chr1 (313-351)||(51809757-51809795)
chr1 (314-351)||(5457083-5457120)
chr1 (313-350)||(11336291-11336328)
chr1 (313-350)||(11494310-11494347)
chr1 (306-351)||(15336483-15336528)
chr1 (310-351)||(27265701-27265742)
chr1 (313-345)||(3662574-3662606)
chr1 (315-351)||(47839979-47840015)
[»] scaffold0022 (1 HSPs)
scaffold0022 (313-350)||(63368-63405)
[»] scaffold0002 (1 HSPs)
scaffold0002 (314-351)||(332067-332104)
[»] scaffold0085 (1 HSPs)
scaffold0085 (313-345)||(25285-25317)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 23178090 - 23178365
Alignment:
Q  16 atactttgatcagttcatctataagctaccaaatcacgaggtttgattttatcctttactttttcaannnnnnnnnn--acaaatatcatttctctaata 113  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |             |||||||||||||||||||||    
T  23178090 ataccttgatcagttcatctataagctaccaaatcacaaggtttgattttatcctttactttttaatttttttttttgtacaaatatcatttctctaata 23178189  T
Q  114 tatgttgatttttgttgaatttaatgacagcctgttttggaagccaaaatcaccgtagtgaggcttgataaaaactatcgtcctgttcgaatttcagaag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23178190 tatgttgatttttgttgaatttaatgacagcctgttttggaagccaaaaccaccgtagtgaggcttgataaaaactatcgtcctcttcgaatttcagaag 23178289  T
Q  214 atatgaagtctaaaatttttaaatatattggtggagacgactcttaatgcaaatttctgaagaacatttaatttat 289  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23178290 atatgaagtctaaaatttttaaatgtattggtggagacgactcttaatgcaaatttctgaagaacatttaatttat 23178365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 23188606 - 23188668
Alignment:
Q  289 tagattgttgacaaagtaaactaaggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||    
T  23188606 tagattgttgacaaagtaaactagggttaatagtgttttacctcctgtaatataggttatttt 23188668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 23223552 - 23223658
Alignment:
Q  136 aatgacagcctgttttggaagccaaaatcaccgtagtgaggcttgataaaaactatcgtcctgttcgaatttcagaagatatgaagtctaaaatttttaa 235  Q
    ||||||||||| |||||||||||||   ||| | |||| ||||||| ||||||||||||||| |||||||| | | |||||| ||||||||| || ||||    
T  23223552 aatgacagcctattttggaagccaaggccacagcagtgtggcttgacaaaaactatcgtcctattcgaattccggcagatattaagtctaaatttgttaa 23223651  T
Q  236 atatatt 242  Q
    || ||||    
T  23223652 atttatt 23223658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 31920061 - 31920098
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||| |||||||||||||||||||||    
T  31920061 ggttaatagtgttttaccccctgtaatataggttattt 31920098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 38874713 - 38874672
Alignment:
Q  310 taaggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  38874713 taaggttaatagtgttttactccctgtaatataggttatttt 38874672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 351
Target Start/End: Original strand, 38874338 - 38874377
Alignment:
Q  312 aggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  38874338 aggttaatagtgttttaccccctgtaatttaggttatttt 38874377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 21039866 - 21039904
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  21039866 ggttaatagtgttttaccccctgtaatataggtcatttt 21039904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 25962803 - 25962841
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  25962803 ggttaatagtgttttaccccctgtaatataggtcatttt 25962841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 31312827 - 31312789
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  31312827 ggttaatagtgttttaccccctgtaatataggtcatttt 31312789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 4413928 - 4413965
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  4413928 ggttaatagtgttttaccccctgtaatataggtcattt 4413965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 12148282 - 12148245
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  12148282 ggttaatagtgttttaccccctgtaatataggtcattt 12148245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 25963177 - 25963140
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  25963177 ggttaatagtgctttatcccctgtaatataggtcattt 25963140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 342
Target Start/End: Complemental strand, 34648766 - 34648737
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatata 342  Q
    ||||||||||||||||||||||||||||||    
T  34648766 ggttaatagtgttttatcccctgtaatata 34648737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 37082330 - 37082293
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  37082330 ggttaatagtgttttaccccctgtaatataggtaattt 37082293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 4221735 - 4221775
Alignment:
Q  311 aaggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||||| |||||||| |||||||||||||||| |||||    
T  4221735 aaggttaatggtgttttagcccctgtaatataggtcatttt 4221775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 37217576 - 37217544
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggt 345  Q
    |||||||||||||||| ||||||||||||||||    
T  37217576 ggttaatagtgttttaccccctgtaatataggt 37217544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 350
Target Start/End: Original strand, 26498508 - 26498547
Alignment:
Q  311 aaggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  26498508 aaggttaatagtgttttatcccctgtaatatatgttattt 26498547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 19272663 - 19272700
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  19272663 ggttaatagtgttttatcccctgtaatataggtcattt 19272700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 33563731 - 33563771
Alignment:
Q  311 aaggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  33563731 aaggttaatggtgttttaccccctgtaatataggttatttt 33563771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 7318441 - 7318403
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  7318441 ggttaatagtgttttatcccctataatataggtcatttt 7318403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 11115261 - 11115299
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  11115261 ggttaatggtgttttaccccctgtaatataggttatttt 11115299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 16139172 - 16139134
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  16139172 ggttaatagtgctttatcccctgtaatataggtcatttt 16139134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 32596406 - 32596444
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  32596406 ggttaatggtgctttatcccctgtaatataggttatttt 32596444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 36525648 - 36525610
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  36525648 ggttaatagtgttttaccccctgtaatataggtcatttt 36525610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 38127764 - 38127801
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  38127764 ggttaatagtgttttaccccctgtaatataggtcattt 38127801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 5558221 - 5558261
Alignment:
Q  311 aaggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||||| |||||||| |||||||||||||||| |||||    
T  5558221 aaggttaatggtgttttaccccctgtaatataggtcatttt 5558261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 17920090 - 17920130
Alignment:
Q  311 aaggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||||| |||||||| |||||||||||||||| |||||    
T  17920090 aaggttaatggtgttttaccccctgtaatataggtcatttt 17920130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 35158184 - 35158222
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  35158184 ggttaatagtgttttatcccctgtaatataggtcatttt 35158222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 10975896 - 10975860
Alignment:
Q  315 ttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||| ||||||||||||||||||||||    
T  10975896 ttaatagtgttttaccccctgtaatataggttatttt 10975860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 20164479 - 20164441
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  20164479 ggttaatagtgttttaccccctgtaatataggtcatttt 20164441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 21444239 - 21444201
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  21444239 ggttaatagtgttttaccccctgtaatataggtcatttt 21444201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 47973914 - 47973876
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  47973914 ggttaatggtgctttatcccctgtaatataggttatttt 47973876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 17167842 - 17167805
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  17167842 ggttaatagtgctttatcccctgtaatataggtcattt 17167805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 24478025 - 24478062
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  24478025 ggttaatagtgttttaccccctgtaatataggtcattt 24478062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 31387601 - 31387565
Alignment:
Q  315 ttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  31387601 ttaatagtgttttatcctctgtaatatagattatttt 31387565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 41380760 - 41380728
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggt 345  Q
    |||||||||||||||| ||||||||||||||||    
T  41380760 ggttaatagtgttttaccccctgtaatataggt 41380728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 43110763 - 43110725
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  43110763 ggttaatagtgttttatcccctgtaatataggtcatttt 43110725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 342
Target Start/End: Complemental strand, 6473978 - 6473946
Alignment:
Q  310 taaggttaatagtgttttatcccctgtaatata 342  Q
    |||||||||||||||||||||||||||||||||    
T  6473978 taaggttaatagtgttttatcccctgtaatata 6473946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 26769922 - 26769960
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  26769922 ggttaatagtgttttaccccctgtaatataggtcatttt 26769960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 31074038 - 31073993
Alignment:
Q  305 taaactaaggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||| |||||||||||||||| |||||||||||||||| |||||    
T  31074038 taaactagggttaatagtgtttta-cccctgtaatataggtcatttt 31073993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 44986797 - 44986759
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  44986797 ggttaatggtgttttatcccctgtaatataggtcatttt 44986759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 23626293 - 23626256
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  23626293 ggttaatagtgttttaccccctgtaatataggtcattt 23626256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 7272871 - 7272831
Alignment:
Q  311 aaggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||||||||| |||| |||||||||||||||| |||||    
T  7272871 aaggttaatagtgctttaccccctgtaatataggtcatttt 7272831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 14004637 - 14004601
Alignment:
Q  314 gttaatagtgttttatcccctgtaatataggttattt 350  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  14004637 gttaatagtgttttaccccctgtaatataggtcattt 14004601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 3448931 - 3448890
Alignment:
Q  310 taaggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||| ||||||||||||||||||||||||| |||||    
T  3448931 taaggttaatggtgttttatcccctgtaatataggtcatttt 3448890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 4335038 - 4335000
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  4335038 ggttaatagtgttttaccccctgtaatataggtcatttt 4335000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 13572541 - 13572579
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  13572541 ggttaatagtgttttaccccctgtaatataggtcatttt 13572579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 25653705 - 25653743
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  25653705 ggttaatagtgttttaccccctgtaatataggtcatttt 25653743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 38687567 - 38687529
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  38687567 ggttaatggtgttttatcccctgtaatataggtcatttt 38687529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 38711996 - 38711958
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  38711996 ggttaatagtgttttaccccctgtaatataggtcatttt 38711958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 39301882 - 39301920
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  39301882 ggttaatggtgctttatcccctgtaatataggttatttt 39301920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 19152498 - 19152461
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  19152498 ggttaatagtgttttaacccctgtaatatatgttattt 19152461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 34227328 - 34227365
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  34227328 ggttaatagtgttttaccccctgtaatataggtcattt 34227365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 5832340 - 5832377
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  5832340 ggttaatagtgctttatcccctgtaatataggttattt 5832377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 33552833 - 33552788
Alignment:
Q  306 aaactaaggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||| ||||||| ||||||||||||||||||||||||| |||||    
T  33552833 aaactagggttaatggtgttttatcccctgtaatataggtcatttt 33552788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 344
Target Start/End: Complemental strand, 11425824 - 11425793
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatatagg 344  Q
    ||||||||||||||||||||||||||||||||    
T  11425824 ggttaatagtgttttatcccctgtaatatagg 11425793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 10545832 - 10545870
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  10545832 ggttaatagtgttttaccccctgtaatataggtcatttt 10545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 30381563 - 30381605
Alignment:
Q  309 ctaaggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||   |||||||||||||||||||||||||||    
T  30381563 ctaaggttaataggtctttatcccctgtaatataggttatttt 30381605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 8238032 - 8237995
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  8238032 ggttaatagtgttttaccccctgtaatataggtcattt 8237995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 18591122 - 18591159
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  18591122 ggttaatagtgttttatcccctataatataggtcattt 18591159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 9676594 - 9676566
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatat 341  Q
    |||||||||||||||||||||||||||||    
T  9676594 ggttaatagtgttttatcccctgtaatat 9676566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 18028948 - 18028904
Alignment:
Q  307 aactaaggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||| ||||||||||||||||||||| | |||||||||| |||||    
T  18028948 aacttaggttaatagtgttttatcccttataatataggtcatttt 18028904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 18509984 - 18510021
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  18509984 ggttaatagtgttttatcccctgtaatataggtcattt 18510021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 39133455 - 39133419
Alignment:
Q  315 ttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||||||||||||||| ||||||||    
T  39133455 ttaatagtgttttatcccctgtaatataagttatttt 39133419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 14574983 - 14574944
Alignment:
Q  313 ggttaatagtgttttatcc-cctgtaatataggttatttt 351  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  14574983 ggttaatagtgttttatcctcctgtaatataggttatttt 14574944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 16588982 - 16589020
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  16588982 ggttaatagtgttttacctcctgtaatataggttatttt 16589020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 19909381 - 19909343
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  19909381 ggttaatagtgttttaccccctgtaatataggtcatttt 19909343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 31592530 - 31592568
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  31592530 ggttaatggtgttttaccccctgtaatataggttatttt 31592568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 40450259 - 40450297
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  40450259 ggttaatggtgttttaccccctgtaatataggttatttt 40450297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 51902047 - 51902085
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  51902047 ggttaatggtgttttaccccctgtaatataggttatttt 51902085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 14121617 - 14121580
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  14121617 ggttaatagtgttttaccccctgtaatataggtaattt 14121580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 351
Target Start/End: Complemental strand, 14946325 - 14946292
Alignment:
Q  318 atagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||||||| ||||||||||||||||||||||    
T  14946325 atagtgttttaccccctgtaatataggttatttt 14946292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 17494606 - 17494569
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  17494606 ggttaatagtgttttaacccctgtaatataggtcattt 17494569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 29104160 - 29104197
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  29104160 ggttaatagtgttttaccccctgtaatataggtcattt 29104197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 31226555 - 31226518
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  31226555 ggttaatagtgttttaccccctgtaatataggtcattt 31226518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 351
Target Start/End: Complemental strand, 53069650 - 53069613
Alignment:
Q  314 gttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  53069650 gttaatagtgctttatctcctgtaatataggttatttt 53069613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 3652265 - 3652309
Alignment:
Q  306 aaactaaggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||| |||||||||||||||| |||||||||| ||||| ||||    
T  3652265 aaactagggttaatagtgttttaccccctgtaatttaggtcattt 3652309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 6463848 - 6463816
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggt 345  Q
    |||||||||||||||||| ||||||||||||||    
T  6463848 ggttaatagtgttttatctcctgtaatataggt 6463816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 27627038 - 27627006
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggt 345  Q
    |||||||||||||||| ||||||||||||||||    
T  27627038 ggttaatagtgttttaccccctgtaatataggt 27627006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 49300739 - 49300775
Alignment:
Q  314 gttaatagtgttttatcccctgtaatataggttattt 350  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  49300739 gttaatagtgttttaccccctgtaatataggtcattt 49300775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 242392 - 242431
Alignment:
Q  313 ggttaatagtgttttatcc-cctgtaatataggttatttt 351  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  242392 ggttaatagtgttttatcctcctgtaatataggttatttt 242431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 212514 - 212552
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  212514 ggttaatagtgttttaccccctgtaatataggtcatttt 212552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 13790303 - 13790341
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  13790303 ggttaataatgttttatcccctgtaatataggtcatttt 13790341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 26399230 - 26399192
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  26399230 ggttaatagtgttttaccccctgtaatataggtcatttt 26399192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 51809757 - 51809795
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  51809757 ggttaatggtgttttaccccctgtaatataggttatttt 51809795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 5457083 - 5457120
Alignment:
Q  314 gttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  5457083 gttaatagtgttttaccccctgtaatataggtcatttt 5457120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 11336291 - 11336328
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  11336291 ggttaatagtgttttatcccctataatataggtcattt 11336328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 11494310 - 11494347
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  11494310 ggttaatagtgttttatcccctataatataggtcattt 11494347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 15336483 - 15336528
Alignment:
Q  306 aaactaaggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||| |||||||||| ||| | ||||||||||||||||||||||    
T  15336483 aaactagggttaatagtctttcaccccctgtaatataggttatttt 15336528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 27265701 - 27265742
Alignment:
Q  310 taaggttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||||||||||||||| ||||||||||||| || |||||    
T  27265701 taaggttaatagtgttttaccccctgtaatataagtcatttt 27265742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 3662574 - 3662606
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggt 345  Q
    ||||||||||| |||||||||||||||||||||    
T  3662574 ggttaatagtgctttatcccctgtaatataggt 3662606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 47840015 - 47839979
Alignment:
Q  315 ttaatagtgttttatcccctgtaatataggttatttt 351  Q
    |||||||||||||| |||||||||||||||| |||||    
T  47840015 ttaatagtgttttaccccctgtaatataggtcatttt 47839979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 63405 - 63368
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggttattt 350  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  63405 ggttaatagtgttttaccccctgtaatataggtcattt 63368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 332067 - 332104
Alignment:
Q  314 gttaatagtgttttatcccctgtaatataggttatttt 351  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  332067 gttaatagtgttttaccccctgtaatataggtcatttt 332104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 25317 - 25285
Alignment:
Q  313 ggttaatagtgttttatcccctgtaatataggt 345  Q
    |||||||||||||||| ||||||||||||||||    
T  25317 ggttaatagtgttttaccccctgtaatataggt 25285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University