View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_19 (Length: 347)
Name: NF18819_low_19
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 23827154 - 23827294
Alignment:
| Q |
19 |
tgttagtgcttcatcgatcttgcttttgtgggccaccacagtatattcacccatattagttccctacatataaacaacctttttcagctctcctccttgc |
118 |
Q |
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| T |
23827154 |
tgttagtgcttcatcgatcttgcttttgtgggccaccacagtatattcacccatattagttccctacatataaaccacctttttcagctctcctccttgc |
23827253 |
T |
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| Q |
119 |
tttttctcttgtctatatccttccttgaacttcattactaa |
159 |
Q |
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| T |
23827254 |
tttttctcttgtctatatccttccttgaacttcattactaa |
23827294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 23827370 - 23827467
Alignment:
| Q |
234 |
gagtttcaattcacaatcatgagtcatttcttttggagttgaccttctctgctttgttgttgtgatctacaggcaacaaagttatgggaattagtatt |
331 |
Q |
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| T |
23827370 |
gagtttcaattcacaatcatgagtcatttcttttggagttgaccttctctgctttgttgttgtgatctacaggcaacaaagttatgggaattagtatt |
23827467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 248 - 331
Target Start/End: Original strand, 23823522 - 23823605
Alignment:
| Q |
248 |
aatcatgagtcatttcttttggagttgaccttctctgctttgttgttgtgatctacaggcaacaaagttatgggaattagtatt |
331 |
Q |
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| T |
23823522 |
aatcatggttcatttctgttggatatgaccttctctactttgttgttgtgatctataggcaacaaagctatgggaattagtatt |
23823605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 23831229 - 23831338
Alignment:
| Q |
47 |
tgggccaccacagtatattcacccatattagttccctacatataaacaacctttttcagctctcctccttgctttttctcttgtctatatccttccttga |
146 |
Q |
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| T |
23831229 |
tgggccaccacagaagactcatccatattagttctctacatatcaacactcttcttcacctctcctccttcctgtttttcttctttatattcttccttga |
23831328 |
T |
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| Q |
147 |
acttcattac |
156 |
Q |
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| T |
23831329 |
acttcattac |
23831338 |
T |
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