View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18819_low_2 (Length: 729)
Name: NF18819_low_2
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 618; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 14 - 711
Target Start/End: Complemental strand, 48967352 - 48966657
Alignment:
| Q |
14 |
cagagataacatagagaaagctataaggagattgatagacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctaca |
113 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48967352 |
cagagataacatagagaaagctataagaagattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctaca |
48967253 |
T |
|
| Q |
114 |
cgagcacttcaagaaggtggctcgtcttataataatttagttgctttgattgatgatcttaaaagaatgagagacaacaagacacttacataatttcaag |
213 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48967252 |
cgagcacttcaagaaggtggcttgtcttataataatttacttgctttgattgatgatcttaaaagaatgagagacaacaagacacttacataatttcaag |
48967153 |
T |
|
| Q |
214 |
gactattgtcatagtatggtgagagtgggtcgtgttggcacataccacgtgccaggccattaaccgagttagtattatatccatgattcaatttagtaga |
313 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48967152 |
gactattgtctaagtatggtgagagtgggtcgtcttggcacataccacgtgccaggccattaaccgagttagtattatatccatgattcaatttagtaga |
48967053 |
T |
|
| Q |
314 |
gattgcttctcttttgtttttaaaataacattaattaatatgttgaattcaagttcatgatgaatacgtcgatattatttttgtcatggtattttaattc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48967052 |
gattgcttctcttttgtttttaaaataacattaattaatatgttgaattcaagttcatgatgaatacgtcgatattatttttgtcatggtattttaattc |
48966953 |
T |
|
| Q |
414 |
caaggaagataggnnnnnnnncacattctagaataaaaattagcaaacactattaataactttggtaattaagcttaaatattaccttgaaccatgacac |
513 |
Q |
| |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48966952 |
caaggaagata-gaaaaaaaacacattctagaataaaaattagcaaacactattaataactctggtaattaagcttaaatattaccttgaaccatgacac |
48966854 |
T |
|
| Q |
514 |
tacaatgggggcatacgaatttggtactgtacatctgtaaagtgcatgttattagaaaatgaaatagtagtcatctatttcaattataacaggattaagc |
613 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48966853 |
tacaat-ggggcatacgaatttggtactgtacatctgtaaagtgcatgttattagaaaatgaaatagtagtcatctatttcaattataacaggattaagc |
48966755 |
T |
|
| Q |
614 |
agccacagttcaatcattgaaattaaacacttggccaatattgtcaaaattttaaagagaaaaagaaaaatacgtggtggcttgtcgaatgttggatg |
711 |
Q |
| |
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| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48966754 |
acccacagttcaatcattgaaattaaatacttggccaatattgtcaaaattttaaagagaaaaagaaaaatacgtggtggcttgtcgaatgttggatg |
48966657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 48965219 - 48965050
Alignment:
| Q |
18 |
gataacatagagaaagctataaggagattgatagacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctacacgag |
117 |
Q |
| |
|
|||| ||||||||| ||| | ||||||||||| |||| || |||||||||||||| || ||| ||||||| ||| |||||||||||||||| ||||| |
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| T |
48965219 |
gatagcatagagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgag |
48965120 |
T |
|
| Q |
118 |
cacttcaagaaggtggctcgtcttataataatttagttgctttgattgatgatcttaaaagaatgagaga |
187 |
Q |
| |
|
| |||||||||||||||||||| |||| ||||| | || |||||||||||||| |||||| ||||||| |
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|
| T |
48965119 |
ccattcaagaaggtggctcgtctcataagaatttgttagccttgattgatgatctcaaaagattgagaga |
48965050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 60 - 200
Target Start/End: Complemental strand, 48957992 - 48957852
Alignment:
| Q |
60 |
gatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctacacgagcacttcaagaaggtggctcgtcttataataatttagttg-ct |
158 |
Q |
| |
|
|||||||||||| | |||| ||| ||||||| ||| || |||||||||||||||||||| ||||||||||||| || ||| |||| ||||| |||| || |
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|
| T |
48957992 |
gatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacacgagctgttcaagaaggtggatcatctcataacaattt-gttgtct |
48957894 |
T |
|
| Q |
159 |
ttgattgatgatcttaaaagaatgagagacaacaagacactt |
200 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||||||||| |
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|
| T |
48957893 |
ttgattgatgatcttaaacaaatgagaaactgcaagacactt |
48957852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 189
Target Start/End: Complemental strand, 48961115 - 48961010
Alignment:
| Q |
84 |
cgtgctcgagactttggagaaaaggctacacgagcacttcaagaaggtggctcgtcttataataatttagttgctttgattgatgatcttaaaagaatga |
183 |
Q |
| |
|
||||||||||| ||||| || ||||||| | |||| |||||| ||| ||||| ||| |||||||||| | ||||| |||||||||||||||||| ||| |
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|
| T |
48961115 |
cgtgctcgagagtttggggataaggctatatgagctgttcaagtaggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattga |
48961016 |
T |
|
| Q |
184 |
gagaca |
189 |
Q |
| |
|
|||||| |
|
|
| T |
48961015 |
gagaca |
48961010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 48912659 - 48912749
Alignment:
| Q |
43 |
gattgatagacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctacacgagcacttcaagaaggtgg |
133 |
Q |
| |
|
||||||| |||| || |||||||||||||| |||||||||| ||||||||| ||||| || || |||| || ||| || |||||||||| |
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|
| T |
48912659 |
gattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg |
48912749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 13448260 - 13448083
Alignment:
| Q |
11 |
gagcagagataacatagagaaagctataaggagattgatagacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggct |
110 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||||||| ||| || ||||||||||| || ||||| | |||||||||||| ||||||||||| ||| |
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|
| T |
13448260 |
gagcagagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagct |
13448161 |
T |
|
| Q |
111 |
acacgagcacttcaagaaggtggctcgtcttataataatttagttgctttgattgatgatcttaaaagaatgagagac |
188 |
Q |
| |
|
| || ||| ||||||||||||||||||||||||||||||| | ||||||||||| || ||||||||| ||||||| |
|
|
| T |
13448160 |
atacaagctattcaagaaggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac |
13448083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 13440097 - 13439920
Alignment:
| Q |
11 |
gagcagagataacatagagaaagctataaggagattgatagacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggct |
110 |
Q |
| |
|
|||||| |||||||||||||| ||| | ||||||||||| || |||| ||||||||| | || || || | || ||||| ||| ||||||||||||||| |
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|
| T |
13440097 |
gagcagggataacatagagaaggctgtgaggagattgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggct |
13439998 |
T |
|
| Q |
111 |
acacgagcacttcaagaaggtggctcgtcttataataatttagttgctttgattgatgatcttaaaagaatgagagac |
188 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||| | ||||| ||||| || ||||||||| |||||||| |
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|
| T |
13439997 |
acacaagctattcaagaaggtggctcgtcttataataatttgttggctttaattgaagaacttaaaagattgagagac |
13439920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 13454731 - 13454557
Alignment:
| Q |
11 |
gagcagagataacatagagaaagctataaggagattgatagacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggct |
110 |
Q |
| |
|
||||| ||||| ||||||||| ||| | ||||||||||| | | || ||||||||| | || ||||| |||||||||||| ||||||||||||||| |
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|
| T |
13454731 |
gagcaaagatagcatagagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggct |
13454632 |
T |
|
| Q |
111 |
acacgagcacttcaagaaggtggctcgtcttataataatttagttgctttgattgatgatcttaaaagaatgaga |
185 |
Q |
| |
|
|||| ||| ||||| |||||||||| |||||||||||||| | |||||||||||||| ||||||||| ||||| |
|
|
| T |
13454631 |
acacaagctattcaaaaaggtggctcatcttataataatttgttggctttgattgatgaacttaaaagattgaga |
13454557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 28385231 - 28385053
Alignment:
| Q |
11 |
gagcagagataacatagagaaagctataaggagattgatagacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggct |
110 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||||| ||| || |||||||||||| || || ||||||||||||||||| || ||||| |||||| |
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|
| T |
28385231 |
gagcagagataacatagagaaggctatgaggaaattgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggct |
28385132 |
T |
|
| Q |
111 |
acacgagcacttcaagaaggtggctcgtcttataataatttagttgctttgattgatgatcttaaaagaatgagagaca |
189 |
Q |
| |
|
|||||||| || |||||||||| || |||||||||||||| | ||||| || || || ||||||||| ||||||||| |
|
|
| T |
28385131 |
acacgagctgttaaagaaggtggttcctcttataataatttgttagctttaatcgacgaacttaaaagattgagagaca |
28385053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 12540580 - 12540442
Alignment:
| Q |
13 |
gcagagataacatagagaaagctataaggagattgatagacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctac |
112 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||||| || || |||||||||| || || |||| |||||| ||||| ||||||| ||||||| |
|
|
| T |
12540580 |
gcagagatggcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctag |
12540481 |
T |
|
| Q |
113 |
acgagcacttcaagaaggtggctcgtcttataataattt |
151 |
Q |
| |
|
|||||| ||||||||||||| || ||| |||||||||| |
|
|
| T |
12540480 |
acgagctgttcaagaaggtggttcctctcataataattt |
12540442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 12641776 - 12641940
Alignment:
| Q |
24 |
atagagaaagctataaggagattgatagacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctacacgagcacttc |
123 |
Q |
| |
|
|||||||||||| | ||||||||||| ||| ||| ||||||||| || | |||||||||||||||| ||| ||||| |||||||||||| || || |
|
|
| T |
12641776 |
atagagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgctgttg |
12641875 |
T |
|
| Q |
124 |
aagaaggtggctcgtcttataataatttagttgctttgattgatgatcttaaaagaatgagagac |
188 |
Q |
| |
|
||||||| || |||||| |||| ||||| | ||||||||| | |||||||||||| ||||||| |
|
|
| T |
12641876 |
aagaaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagac |
12641940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 12483810 - 12483924
Alignment:
| Q |
75 |
atcagacaacgtgctcgagactttggagaaaaggctacacgagcacttcaagaaggtggctcgtcttataataatttagttg-ctttgattgatgatctt |
173 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||| || ||| | ||| |||||||||| ||| |||||||||| |||| | ||| ||||||||||| |
|
|
| T |
12483810 |
atcagacaacgtgctcgagaactgggggaaaaggctagactagccgtgcaacaaggtggctcctctaataataattt-gttgtcattggttgatgatctt |
12483908 |
T |
|
| Q |
174 |
aaaagaatgagagaca |
189 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
12483909 |
aaaagatggagagaca |
12483924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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