View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_20 (Length: 319)
Name: NF18819_low_20
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 29071484 - 29071184
Alignment:
| Q |
19 |
gatagaactgagctagttttatcaatcaaatttttctccatattggtttgtttcatgttagctttcttgttaaatgttcaatctataaggtactatagtc |
118 |
Q |
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| T |
29071484 |
gatagaactgagctagttttatcaatcaaatttttctccatattggtttgtttcatgttagctttcttgttgaatgttcaatctataaggtactatagtc |
29071385 |
T |
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| Q |
119 |
atgcaagcattctcatcaatgttcctttcaagaaactgtcatcaaaccttagacaacagaagctgacagctgagtatgttgccaatacagttaaccgtgg |
218 |
Q |
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| T |
29071384 |
atgcaagcatactcatcaatgttcctttcaagaaactatcatcaaaccttagacaacagaagctgacagctgagtatgttgccaatacagttaaccgtgg |
29071285 |
T |
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| Q |
219 |
aagctatttctggtcacttggtttgcgtgcattttacttttccttccctcttttcatgtggatctttggacctattcctatgttgttttcttgttttgca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29071284 |
aagctatttctggtcacttggtttgcgtgcattttacttttccttccctcttttcatgtggatctttggacctattcctatgttgttttcttgttttgca |
29071185 |
T |
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| Q |
319 |
c |
319 |
Q |
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| T |
29071184 |
c |
29071184 |
T |
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