View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_22 (Length: 308)
Name: NF18819_low_22
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_22 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 111 - 308
Target Start/End: Original strand, 56229430 - 56229627
Alignment:
| Q |
111 |
ataggaaacttgaaagttaatccttgcattgtaaattgtaatgcagtcatgagaaagcaaaagaagcaatgatatattcatacacaaagaatatcaatgg |
210 |
Q |
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| T |
56229430 |
ataggaaacttgaaagttaatccttgcattgtaaattgtaatgcagtcatgagaaagcaaaagaagcaatgatatattcatacacaaagaatatcaatgg |
56229529 |
T |
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| Q |
211 |
ctttgctgctttcctggaagagaaagaagctgctgacattgcaggtaaccttcaaaataactgatgatatgaatggaagaatattaatgtgttgtttt |
308 |
Q |
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| T |
56229530 |
ctttgctgctttcctggaagagaaagaagctgctgacattgcaggtaaccttcaaaataactgatgatatgaatggaagaatatcaatgtgttgtttt |
56229627 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 56229323 - 56229357
Alignment:
| Q |
4 |
aagaatatgatgggataaaatttcaacggaacatc |
38 |
Q |
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| T |
56229323 |
aagaaaatgatgggataaaatttcaacggaacatc |
56229357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 145 - 269
Target Start/End: Original strand, 39186126 - 39186250
Alignment:
| Q |
145 |
attgtaatgcagtcatgagaaagcaaaagaagcaatgatatattcatacacaaagaatatcaatggctttgctgctttcctggaagagaaagaagctgct |
244 |
Q |
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| T |
39186126 |
attgtaattcagccatgagaaagcaaaagaggcaatgatatattcatacacaaagaatatcaatggatttgctgctctcttggaagagaaagaagctgct |
39186225 |
T |
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| Q |
245 |
gacattgcaggtaaccttcaaaata |
269 |
Q |
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| T |
39186226 |
gatattgcaggtaaccttcaaaata |
39186250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 31197124 - 31197216
Alignment:
| Q |
161 |
gagaaagcaaaagaagcaatgatatattcatacacaaagaatatcaatggctttgctgctttcctggaagagaaagaagctgctgacattgca |
253 |
Q |
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| T |
31197124 |
gagaaagcaaaagaagcaatcatttattcatataacaaacacatcaatggctttgctgctctacttgaagatgaagaagctgcagatattgca |
31197216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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