View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_24 (Length: 293)
Name: NF18819_low_24
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 22 - 272
Target Start/End: Original strand, 28079730 - 28079980
Alignment:
| Q |
22 |
aaacaatatgaataacatctgggacgacaactcctccgtcatggaagctttcatgaccacctccgacatctctagtttctggcttccaacaccacattcc |
121 |
Q |
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| T |
28079730 |
aaacaatatgaataacatctgggacgacaactcctccgtcatggaagctttcatgaccacctccgacatctctagtttctggcttccaacaccacattcc |
28079829 |
T |
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| Q |
122 |
gccacttcaaccactgctgcaccagtgcctcctccaccacaacagtctctattcaatcaagagaccctccagcaccgtcttcaagctcttatcgaaggag |
221 |
Q |
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| T |
28079830 |
gccacttcaaccactgctgcaccagtgcctcctccaccacaacagtctctattcaatcaagagactctccagcaccgtcttcaagctcttatcgaaggag |
28079929 |
T |
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| Q |
222 |
ccaaagaaagctggacctacgcgattttctggcaatcttcttacgactaca |
272 |
Q |
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| T |
28079930 |
cgaaagaaagctggacctacgcgattttctggcaatcttcttacgactaca |
28079980 |
T |
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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 12884546 - 12884644
Alignment:
| Q |
172 |
attcaatcaagagaccctccagcaccgtcttcaagctcttatcgaaggagccaaagaaagctggacctacgcgattttctggcaatcttcttacgacta |
270 |
Q |
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| T |
12884546 |
attcaaccaagacactctccaacaacgtcttcaggctttaatcgaaggtgcaaaagaaatctggacctacgctattttctggcaaccttcttacgacta |
12884644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 12836517 - 12836615
Alignment:
| Q |
172 |
attcaatcaagagaccctccagcaccgtcttcaagctcttatcgaaggagccaaagaaagctggacctacgcgattttctggcaatcttcttacgacta |
270 |
Q |
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| T |
12836517 |
attcaaccaagacactctccaacaacgtcttcaagctttaattgaaggcgtaaaagaaatctggacctacgctatcttctggcaaccttcttatgacta |
12836615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 12868357 - 12868455
Alignment:
| Q |
172 |
attcaatcaagagaccctccagcaccgtcttcaagctcttatcgaaggagccaaagaaagctggacctacgcgattttctggcaatcttcttacgacta |
270 |
Q |
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| T |
12868357 |
attcaaccaagacactctccaacaacgtcttcaagctttaattgaaggcgtaaaagaaatctggacctacgctatcttctggcaaccttcttatgacta |
12868455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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