View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18819_low_27 (Length: 291)
Name: NF18819_low_27
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 52 - 168
Target Start/End: Original strand, 5033371 - 5033487
Alignment:
| Q |
52 |
cctctcgaattcaaggcatatttttgttaattatgttttggtgagtccaataatcaagagtttgttccagagaaagtttagtaatgtctcgcagcatgag |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5033371 |
cctctcgaattcaaggcatatttttgttaattatgttttggtgagtccaataatcaagagtttgttccggagaaagtttagtaatgtctcgcagcatgag |
5033470 |
T |
|
| Q |
152 |
tataaagactatttctt |
168 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5033471 |
tataaagactatttctt |
5033487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 156 - 275
Target Start/End: Original strand, 5033505 - 5033624
Alignment:
| Q |
156 |
aagactatttcttcttgtatgagctgagaattgttttagctaatcactaggttaaggttgaaattatctgacacttagccatacgagtctctcatagact |
255 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5033505 |
aagactatttcttcttgtatgagctaagaattgttttagctaatcactaggttaaggttgaaattatctgacacttggccatacgagtctctcatagaca |
5033604 |
T |
|
| Q |
256 |
agttttctacaacagatttt |
275 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5033605 |
agttttctacaacagatttt |
5033624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 5032976 - 5033022
Alignment:
| Q |
15 |
tttatttcaagggcactcacataattcaaacctcatacctctcgaat |
61 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
5032976 |
tttatttcaagggcactcgcataattcaaactcgatacctctcgaat |
5033022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University