View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_28 (Length: 288)
Name: NF18819_low_28
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_28 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 503272 - 502985
Alignment:
| Q |
1 |
acatccaacgccggaacctatgctgctnnnnnnncatcaaacgacaaaagactttgctagtaaaaggaacttaccacattgaaagccggaagactatgtt |
100 |
Q |
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| T |
503272 |
acatccaacgccggaacctatgctgctaaaaaaacatcaaacgacaaaagactttgctagtaaaaggaacttaccacattgaaagccggaagactatgtt |
503173 |
T |
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| Q |
101 |
tataataagcacgatcctgtctgttctattaccaacaacaaaactgtagatgtgaattctgattctgcagcggtagaaatagtcgtagagccacctgcaa |
200 |
Q |
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| T |
503172 |
tataataagcacgatcctgtctgttctattaccaacaacaaaactgtagatgtgaattctgattctgcagcggtagaaatagtcgtagagccacctgcaa |
503073 |
T |
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| Q |
201 |
ctgtaccgccagatgcatcactgtccagttttgaaaccccaactgaacatggtttacatactgaaattgaacctcaagtattggaagc |
288 |
Q |
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| T |
503072 |
ctgtaccgccagatgcatcactgtccagttttgaaaccccaactgaacttggtttacatactgaaattgaacctcaagtatcggaagc |
502985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 288
Target Start/End: Complemental strand, 11789787 - 11789650
Alignment:
| Q |
151 |
tgtgaattctgattctgcagcggtagaaatagtcgtagagccacctgcaactgtaccgccagatgcatcactgtccagttttgaaaccccaactgaacat |
250 |
Q |
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| T |
11789787 |
tgtgaattctgattctgcagcgatcgaaatatttatagaaccacttgcatccgcgccaccagatccatcattgtcaagttttgaacccctaactgaacat |
11789688 |
T |
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| Q |
251 |
ggtttacatactgaaattgaacctcaagtattggaagc |
288 |
Q |
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| T |
11789687 |
ggtctacatactgaaactgaacctcaagtatcggaagc |
11789650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 288
Target Start/End: Original strand, 15440158 - 15440241
Alignment:
| Q |
205 |
accgccagatgcatcactgtccagttttgaaaccccaactgaacatggtttacatactgaaattgaacctcaagtattggaagc |
288 |
Q |
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|||| ||||||||||| |||| ||| ||||| || ||||||||||||| ||||||||| | ||||||||||||||| |||||| |
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| T |
15440158 |
accgacagatgcatcagtgtcaagtgttgaactcctaactgaacatggtctacatactgcagttgaacctcaagtatcggaagc |
15440241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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