View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18819_low_32 (Length: 265)
Name: NF18819_low_32
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_32 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 265
Target Start/End: Complemental strand, 9453496 - 9453255
Alignment:
| Q |
24 |
gtaccggagtgttcacctaattacaatgaaactcttaaattattttattaatttttcttgtattcctcgacttcaaacaataatgttctaacttctgatg |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
9453496 |
gtaccggagtgttcacctaattacaatgaaactcttaaattattttattaatttttcttgtattccttgacttcaaataataatgttctaacttctgatg |
9453397 |
T |
|
| Q |
124 |
gatgccatgtattccgttgagatttgtgtatacattgcaacttaatttttagctatttaaaagagtctttagattgcattgagattaacttaaagtctaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
9453396 |
gatgccatgtattccgttgagatttgtgtatacattgcaacttaatttttagctatttaaaagagtctttagattacattgagcttaacttaaagtctaa |
9453297 |
T |
|
| Q |
224 |
attaagaaggatcaatacaataacaatagaaatcattttctt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
9453296 |
attaagaaggatcaatacaataacaatataaataattttctt |
9453255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 9442162 - 9442076
Alignment:
| Q |
129 |
catgtattccgttgagatttgtgtatacattgcaacttaatt-tttagctatttaaaagagtctttagattgcattgagattaactt |
214 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||||||||||| || | ||||||| || || |||||||| ||||||| ||||||| |
|
|
| T |
9442162 |
catgtatttagttgaaatttgtttatacattgcaacttaattcttaaactatttacaatggtgtttagattacattgagcttaactt |
9442076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University