View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_39 (Length: 255)
Name: NF18819_low_39
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 26735150 - 26735389
Alignment:
| Q |
1 |
tgacttcagccgaaacatgcttaccggtgaggttcctaaagggatgaagaatctgaaggttctaagcatttttaatgtttcgcataataacatatctggg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26735150 |
tgacttcagccgaaacatgcttaccggtgaggttcctaaagggatgaagaatctgaaggttctaagcatttttaatgtttcgcataatagcatatctggg |
26735249 |
T |
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| Q |
101 |
aaaatccctgatgagattagattcatgacgagtctaacgacgctggatttatcttacaacaattttaccggaattgtccccacaggtggtcagtttttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26735250 |
aaaatccctgatgagattagattcatgacgagtctaacgacgctggatttatcttacaacaattttaccggaattgtccccacaggtggtcagtttttgg |
26735349 |
T |
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| Q |
201 |
tcttcaacgaccggtcatttgccggaaatcctagcctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
26735350 |
tcttcaacgaccggtcatttgccggaaatcctagcctatg |
26735389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 26726836 - 26727075
Alignment:
| Q |
1 |
tgacttcagccgaaacatgcttaccggtgaggttcctaaagggatgaagaatctgaaggttctaagcatttttaatgtttcgcataataacatatctggg |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| |||||| ||| |
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| T |
26726836 |
tgacttcagcctaaacatgcttaccggtgaggttcctaaagggatgaagaatctgaaggtgctaaacattttgaatgtttcgcataatagcatatcgggg |
26726935 |
T |
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| Q |
101 |
aaaatccctgatgagattagattcatgacgagtctaacgacgctggatttatcttacaacaattttaccggaattgtccccacaggtggtcagtttttgg |
200 |
Q |
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||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
26726936 |
caaatccccaatgatattagattcatgatgagtctaacgacgctggatttatcttacaacaatttcaccggaattgtccccaccggtggtcagtttttgg |
26727035 |
T |
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| Q |
201 |
tcttcaacgaccggtcatttgccggaaatcctagcctatg |
240 |
Q |
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||||||||||||| |||||||| ||||| |||||| |||| |
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| T |
26727036 |
tcttcaacgaccgttcatttgcgggaaaccctagcttatg |
26727075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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