View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_40 (Length: 251)
Name: NF18819_low_40
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_40 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 33158073 - 33158318
Alignment:
| Q |
10 |
attatacttgcaggcttgcagccacatgtaattatgcagttacaaatgtgcaggcttattctta----gagttataactgaactgaaaagtggctgcaag |
105 |
Q |
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| T |
33158073 |
attatacttgcaggcttgcagccacatgtaattatgcagttacaaatgtgcaggcttattcttattaagagttataactgaactgaaaagtggctgcaag |
33158172 |
T |
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| Q |
106 |
tgtcacatagctgtccctctttagatatttaaaatggatgaaaatgacaataggaaaagtcagaaaaaccaagttcctctaagctttaatttaagaaaac |
205 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33158173 |
tgtcacatagctgtcactctttagatatttaaaatggatgaaaatgacaataggaaaagtcagaaaaaccaagttcctctaagctttaatttaagaaaac |
33158272 |
T |
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| Q |
206 |
attttgttagtaaaaatagttagactcttgaaatgaatcattataa |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33158273 |
attttgttagtaaaaatagttagactcttgaaatgaatcattataa |
33158318 |
T |
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