View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_47 (Length: 238)
Name: NF18819_low_47
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_47 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 25032511 - 25032311
Alignment:
| Q |
37 |
aataatcgtcattttttgttagaagattgaaaaaatttgaaatctgaaatgaaggtttagcaattgtcatcggaaccacccaaactcgccatggcaccgc |
136 |
Q |
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| T |
25032511 |
aataatcgtcattttttgttagaaaaatgaaaaagtt-gaaatctgaaatgaaggtttagcaattgtcatcggaaccacccaaactcgccatggcaccgc |
25032413 |
T |
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| Q |
137 |
cgaccaccgacagattgagccctctaccggacccactcctcatccatatactctcattcctcccaaccagaacctccgtggcaacaacgagtctcatctc |
236 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25032412 |
cgaccaccgacagattaagccctctaccggacccactcctcttccatatactctcattcctcccaaccagaacctccgtggcaacaacgagtctcatctc |
25032313 |
T |
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| Q |
237 |
tc |
238 |
Q |
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|| |
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| T |
25032312 |
tc |
25032311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 24523217 - 24523267
Alignment:
| Q |
181 |
catatactctcattcctcccaaccagaacctccgtggcaacaacgagtctc |
231 |
Q |
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||||||||||| ||||| ||||| ||||||||||||||||| | ||||||| |
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| T |
24523217 |
catatactctccttcctaccaacaagaacctccgtggcaacgatgagtctc |
24523267 |
T |
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