View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_50 (Length: 237)
Name: NF18819_low_50
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 4390517 - 4390308
Alignment:
| Q |
13 |
aagaaaaggaaatgattttgatgaagaaagttttgattttgaagacattttcaagagaatgagagatgggtcaatagctagtggtgataatattcagcag |
112 |
Q |
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| T |
4390517 |
aagaaaaggaaatgatgttgatgaagaaagttttgattttgaagatattttcaagagaatgagagatgggtcattagctagtggtgataatattcaggag |
4390418 |
T |
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| Q |
113 |
gaagcgtgtagagcgattgcgaggtttttctacaacaatgcaataccgatgaaggctgtgaagagtaaggagtttgttagaatgtgtgatatggtttcga |
212 |
Q |
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| T |
4390417 |
gaagcgtgtcgagcgattgcgaggtttttctacaacaatgcaataccgatgaaggcggtgaagagtaaggagtttgttagaatgtgtgatatggtttcga |
4390318 |
T |
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| Q |
213 |
gatgtggtgt |
222 |
Q |
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| T |
4390317 |
gatgtggtgt |
4390308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 4385410 - 4385195
Alignment:
| Q |
13 |
aagaaaaggaaatgattttgatgaagaaagttttgattttgaagacattttcaagagaatgagagatgggtcaatagctagtggtgataata------tt |
106 |
Q |
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| T |
4385410 |
aagaaaagcaaataatgttggtggtgaaagttttgattttgaagatattttcaagaaaaaaagaggtgggtcaatagctagtggtgataataataatatt |
4385311 |
T |
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| Q |
107 |
cagcaggaagcgtgtagagcgattgcgaggtttttctacaacaatgcaataccgatgaaggctgtgaagagtaaggagtttgttagaatgtgtgatatgg |
206 |
Q |
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| T |
4385310 |
gaggaggaagcgtgtcgagcgattgcgaggtttttctacaacaatgcaataccgatgaaggcggtgaagagtatggagtttgttcaaatgtgtgctatgg |
4385211 |
T |
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| Q |
207 |
tttcgagatgtggtgt |
222 |
Q |
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| T |
4385210 |
tttcgagatgtggtgt |
4385195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 4377837 - 4377625
Alignment:
| Q |
13 |
aagaaaaggaaatgattttgatgaagaaagttttgattttgaagacattttcaagagaatgagagatgggtcaatagctagtggtgataatat---tcag |
109 |
Q |
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||||||||||||| || ||| || |||||||||||||||||||| |||||||||| || | |||||| || |||||||||||||||||| | || |
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| T |
4377837 |
aagaaaaggaaataatgttggtggtgaaagttttgattttgaagatattttcaagaaaaaaacagatggcgcattagctagtggtgataataaaaatgag |
4377738 |
T |
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| Q |
110 |
caggaagcgtgtagagcgattgcgaggtttttctacaacaatgcaataccgatgaaggctgtgaagagtaaggagtttgttagaatgtgtgatatggttt |
209 |
Q |
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| T |
4377737 |
gaggaagcgtgtcgagcgattgcgaggtttttctacaacaatttaataccaatgaaggcggtgaagagtatggagtttgttcgaatgtgtgatatggttt |
4377638 |
T |
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| Q |
210 |
cgagatgtggtgt |
222 |
Q |
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| T |
4377637 |
cgagatgtggtgt |
4377625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 4370577 - 4370528
Alignment:
| Q |
111 |
aggaagcgtgtagagcgattgcgaggtttttctacaacaatgcaataccg |
160 |
Q |
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||||||| ||| ||||||||| |||||||||||||||||||| |||||| |
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| T |
4370577 |
aggaagcatgtcaagcgattgcaaggtttttctacaacaatgccataccg |
4370528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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