View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_51 (Length: 237)
Name: NF18819_low_51
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 301735 - 301644
Alignment:
| Q |
79 |
taaatttatgatcttggatgcaaaatgcacaaaaataaagacacctcgtttccaccacataactgaagaacaataaagactccattttcaca |
170 |
Q |
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| T |
301735 |
taaatttataatcttggatgcaaaatgcacaaaaataaagacacctcgtttccaccacataactgaagaacaataaagactccattttcaca |
301644 |
T |
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Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 301862 - 301778
Alignment:
| Q |
1 |
tatgaaacaaagatctatgcagta---aatatagagcctgtaaaatttaggatatcaatattcactatttcatagagcctgtaaa |
82 |
Q |
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| T |
301862 |
tatgaaacaaagatctatgcagtagtaaatatagagcctgtaaaatttaggatatcaatattcactatttcatagagcctataaa |
301778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 300635 - 300607
Alignment:
| Q |
1 |
tatgaaacaaagatctatgcagtaaatat |
29 |
Q |
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| T |
300635 |
tatgaaacaaagatctatgcagtaaatat |
300607 |
T |
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