View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_52 (Length: 233)
Name: NF18819_low_52
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 17129725 - 17129821
Alignment:
| Q |
15 |
ttattcttctaccagtttgatataggtctcatgtggtagctaccacatcaccaaaaccaaatccagaatcgatttgatcattatattttcctgattg |
111 |
Q |
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| T |
17129725 |
ttattcttctaccagtttgatataggtctcatgtggcagctaccacatcaccaaaaccaaatccagaatcgatttgatcattatattttcctgattg |
17129821 |
T |
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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 19971855 - 19971943
Alignment:
| Q |
130 |
aatcacttaccatgttatattgaagatcaaaagagacaaaaggttacaggattgggaaacgagacttacaaataaaagattgacattat |
218 |
Q |
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| T |
19971855 |
aatcactcaccatgttatattgaagatcaaatgagacaaaaggttgcaggattgggagaagagacttacaaataaaagattaacattat |
19971943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 17165357 - 17165447
Alignment:
| Q |
129 |
taatcacttaccatgttatattgaagatcaaaagagacaaaaggttacaggattgggaaacgagacttacaaat-aaaagattgacattat |
218 |
Q |
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| T |
17165357 |
taatcactcactgtgttatatttaagataaaatgggacaatcggttacatgattgggaaatgagacttacaaataaaaagattgacattat |
17165447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 19971705 - 19971795
Alignment:
| Q |
21 |
ttctaccagtttgatataggtctcatgtggtagctaccacatcaccaaaaccaaatccagaatcgatttgatcattatattttcctgattg |
111 |
Q |
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| T |
19971705 |
ttctactagtttgatataggtctcatgtgccagctgccagagtactaaatcccaatccaaaatcgattagataattatactttcctgattg |
19971795 |
T |
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