View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_53 (Length: 231)
Name: NF18819_low_53
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 24978599 - 24978814
Alignment:
| Q |
2 |
tatgcaggcatttcagttgtgttatagttttgtgcaatctcatgttgaaccagttcaatgtcagggatggcaacaagaagattatcagtatgtttcttgc |
101 |
Q |
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| T |
24978599 |
tatgcaggcatttcagttgtgttatagttttgtgcaatctcatgttgaaccagttcaatgtcagggatggcaacaagaagattatcagtatgtttcttgc |
24978698 |
T |
|
| Q |
102 |
cattcagctcagacccaacgtgattctggccagacaagatacgagcaacaatgttcttgccaggcataacattgtcaacttgtttcttgttagacaagcc |
201 |
Q |
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||||||||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24978699 |
cattcagctcagacccaacatgattcttg-cagacaaggtacgagcaacaatgttcttgccaggcataacattgtcaacttgtttcttgctagacaagcc |
24978797 |
T |
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| Q |
202 |
attatcaacttgtttct |
218 |
Q |
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||||||||||||||||| |
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| T |
24978798 |
attatcaacttgtttct |
24978814 |
T |
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