View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_58 (Length: 211)
Name: NF18819_low_58
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 42535513 - 42535316
Alignment:
| Q |
1 |
ctccctattccaatgtagacaattgaattgtttgagaactttgccatactcaatggatataatcttgactggaatatggtcacttgttcttttgaagatg |
100 |
Q |
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| T |
42535513 |
ctccctattctaatgtagacaattgaattgtttgagaactttgccatcctcaatggatataatcttgactggaatatggtcacttgttcttttgaagatg |
42535414 |
T |
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| Q |
101 |
aataacatgatgccagaagtgatgttgatccaatcaacattgctaaatgaaaacaagtatagaaaagtgtagtttttaagatcaaaaaccttgaatat |
198 |
Q |
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| T |
42535413 |
aataacatgatgccagaactgatgttgatccaatcaacattgctaaatgaaaacaagtatagaaaagtgtagtttttaagatcaaaaaccttgaatat |
42535316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 42529791 - 42529597
Alignment:
| Q |
1 |
ctccctattccaatgtagacaattgaattgtttgagaactttgccatactcaatggatataatcttgactggaatatggtcacttgttcttttgaagatg |
100 |
Q |
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| T |
42529791 |
ctccttattccaatgtagataactgaattctttgagaactaagccatcctcaatggatataatcttgattggaatatgatcacttcttctttggaagatg |
42529692 |
T |
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| Q |
101 |
aataacatgatgccagaagtgatgttgatccaatcaacattgctaaatgaaaacaagtatagaaaagtgtagtttttaagatcaaaaaccttgaa |
195 |
Q |
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| T |
42529691 |
aataacatgatgccagaactgatgttgatccgttgaacattgctaaatgaaaacgagtatagaaaagtgtagtttttaaggtcaaaaaccttgaa |
42529597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 27824691 - 27824597
Alignment:
| Q |
22 |
attgaattgtttgagaactttgccatactcaatggatataatcttgactggaatatggtcacttgttcttttgaagatgaataacatgatgccag |
116 |
Q |
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| T |
27824691 |
attgaatgctttgagaactgtgccatcctcaatggatataattttcagtggaatatgaccacttgctctattgaatattaataacatgatgccag |
27824597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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