View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_6 (Length: 468)
Name: NF18819_low_6
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 457
Target Start/End: Original strand, 38366577 - 38367017
Alignment:
| Q |
17 |
agagatcaaagcaatgctgattcaatcctaaaaatgaaatagacttttgtgaacctacaaacttactccaaatttggtggtgaaaactgcatctgaagat |
116 |
Q |
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| T |
38366577 |
agagatcaaatcaatgctgattcaatcctaaaaatgaaatagacttttgtgaacctacaaacttactccaaatttggtggtgaaaactgcatctgaagat |
38366676 |
T |
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| Q |
117 |
catggatgacagttttgattttctcccaagagctttcatgggattttctaagcagagaaacggtgtcaattagtaatttggtaaggcgtggtttttctgg |
216 |
Q |
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| T |
38366677 |
catggatgacagttttgattttctcccaagagctttcatgggattttctaagcagagaaacggtgtcaattagtaatttggtaaggcgtggtttttctgg |
38366776 |
T |
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| Q |
217 |
agaatctttggccacattttggccaccttcatcagcaggggttacatgctggaattggagaattaccaagatgctaaaaacaagaaaaagtttattttcc |
316 |
Q |
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| T |
38366777 |
agaatctgtggccacattttggccaccttcatcagcaggggttacatgctggaattggagaattaccaagatgccaaaaagaagaaaaagtttattttcc |
38366876 |
T |
|
| Q |
317 |
atgctaatgctaattnnnnnnnctaattgttcaaggttagagagatgagaaacttatgctaagttatatggcttgtttggtacttggaagttagcacaac |
416 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38366877 |
atgctaatgctaattaaaaaaactaattgttcaaggttagagagatgagaaacttatgctaaggtatatggcttgtttggtacttggaagttagcacaac |
38366976 |
T |
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| Q |
417 |
ctctccttttaacacgttctactacgtggtgggactttcat |
457 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |
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| T |
38366977 |
ctttccttttaacacgttctactacgtggtgggactttcat |
38367017 |
T |
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