View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18819_low_8 (Length: 451)
Name: NF18819_low_8
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_8 |
 | |
|
| [»] chr7 (19 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 19)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 22876180 - 22875748
Alignment:
| Q |
19 |
gccataagacctcaatatccaactattagtggtgatggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22876180 |
gccataagacctcaatatccaactattagtggtgatggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttg |
22876081 |
T |
|
| Q |
119 |
gtctctttaacaattcaaacaatggaaacagtagcaaccatgtttttggtgttgaacttgattctgttttgactaatgagtttaatgatatcgatgataa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22876080 |
gtctctttaacaattcaaacaatggaaacagtagcaaccatgtttttggtgttgaacttgattctgttttgactaatgagtttaatgatatcgatgataa |
22875981 |
T |
|
| Q |
219 |
ccatgttggaattgatatcaatgatttgaaatcagctatttcaacttctacaggatattacgatgaatataatcgattcagggatttatcccttttcagt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22875980 |
ccatgttggaattgatatcaatgatttgaaatcagctatttcaacttctacaggatattacgatgaatataatcgattcagggatttatcccttttcagt |
22875881 |
T |
|
| Q |
319 |
ggatatcccatgcaggtatggattgactatgatggagtgnnnnnnnngatagatgttactttagctccaatagatgctagtaataaaccaacacaacctt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22875880 |
ggatatcccatgcaggtatggattgactatgatggagtgaaaaaaaagattgatgttactttagctccaatagatgctagtaataaaccaacacaacctt |
22875781 |
T |
|
| Q |
419 |
tgttatcattgaccaaagatctttctccaattc |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
22875780 |
tgttatcattgaccaaagatctttctccaattc |
22875748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 33 - 451
Target Start/End: Complemental strand, 22840302 - 22839878
Alignment:
| Q |
33 |
atatccaactattagtggtgatggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttggtctctttaacaat |
132 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| | |
|
|
| T |
22840302 |
atatccaactcttagtggccatggaattgttttcgttatttctcctacaaaagggctaccaaattcactaccaagtcaataccttggtctctttaaccaa |
22840203 |
T |
|
| Q |
133 |
tcaaacaatggaaacagtagcaaccatgtttttggtgttgaacttgattctgttttgactaatgagtttaatgatatcgatgataaccatgttggaattg |
232 |
Q |
| |
|
|| |||| ||||||| || ||||||||||||||||||||||||||||| || || | | || ||||||| |||||||| |||||||||||||||| |||| |
|
|
| T |
22840202 |
tccaacattggaaacggtggcaaccatgtttttggtgttgaacttgatactcttctaagtagtgagtttgatgatatcaatgataaccatgttggtattg |
22840103 |
T |
|
| Q |
233 |
atatcaatgatttgaaatcagctatttcaacttctacaggatattacgatgaatataatcgattcagggatttatcccttttcagtggatatcccatgca |
332 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| |
|
|
| T |
22840102 |
atatcaatgatttgaaatcagctaattcaactcctgcaggatattacgatgaatataatcgattcagggatttatccctctccagtggatatcctatgca |
22840003 |
T |
|
| Q |
333 |
ggtatggattgactatgatggagtgnnnnnnnngatagatgttactttagctcca------atagatgctagtaataaaccaacacaacctttgttatca |
426 |
Q |
| |
|
||||||||||| |||||| ||||| ||| |||||||| ||||||||| | | | |||| |||||||||||||||| ||||||| |
|
|
| T |
22840002 |
agtatggattgaatatgatagagtgaagaaaaagattgatgttaccttagctccatttagtgttggttttagtcataaaccaacacaaccgacgttatca |
22839903 |
T |
|
| Q |
427 |
ttgaccaaagatctttctccaattc |
451 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
22839902 |
ttgaccaaagatctttccccaattc |
22839878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 22889556 - 22889118
Alignment:
| Q |
19 |
gccataagacctcaatatccaactattagtggtgatggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttg |
118 |
Q |
| |
|
||||||| |||||||||| ||| |||| |||| ||||||||||||||||| ||||||| ||||||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
22889556 |
gccataatacctcaatatgcaaatattggtggccatggaattgtttttgttatttctccaacaaaagggctaccagattcactaccaagtcaataccttg |
22889457 |
T |
|
| Q |
119 |
gtctctttaacaattcaaacaatggaaacagtagcaaccatgtttttggtgttgaacttgattctgttttgactaatgagtttaatgatatcgatgataa |
218 |
Q |
| |
|
||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||| || | | | ||||||| |||||||| | ||||| |
|
|
| T |
22889456 |
gtctctttaacgattccaacagtggaaacagtagcaaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaacgataa |
22889357 |
T |
|
| Q |
219 |
ccatgttggaattgatatcaatgatttgaaatcagctatttcaacttctacaggatattacgatgaatataatcgattcagggatttatcccttttcagt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||| |||| ||| || ||||| |||||||||||||| |||| |
|
|
| T |
22889356 |
ccatgttggaattgatatcaatgatttgaaatcagctgattcaactcctgcaggatattatgatggttatggtcaattcaaggatttatccctttccagt |
22889257 |
T |
|
| Q |
319 |
ggatatcccatgcaggtatggattgactatgatggagtgnnnnnnnngatagatgttactttagctccaa------tagatgctagtaataaaccaacac |
412 |
Q |
| |
|
||||| || ||||||||||||||||| |||||||||||| ||| |||||||||||||| |||| | | |||||||||||||||||||| |
|
|
| T |
22889256 |
ggataccctatgcaggtatggattgaatatgatggagtgaagaaaaagattgatgttactttagcaccaatgagtgttggtgctagtaataaaccaacac |
22889157 |
T |
|
| Q |
413 |
aacctttgttatcattgaccaaagatctttctccaattc |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22889156 |
aacctttgttatcattgaccaaagatctttcttcaattc |
22889118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 22898527 - 22898099
Alignment:
| Q |
19 |
gccataagacctcaatatccaactattagtggtgatggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttg |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||||||| |
|
|
| T |
22898527 |
gccataagacctcaatatccaactcttagtggccatggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttg |
22898428 |
T |
|
| Q |
119 |
gtctctttaacaattcaaacaatggaaacagtagcaaccatgtttttggtgttgaacttgattctgttttgactaatgagtttaatgatatcgatgataa |
218 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| || || | | || |||||||||||||||| ||||||| |
|
|
| T |
22898427 |
gtctctttaacaaatccaacaatggaaatagtagcaaccatgtttttggtgttgaacttgatactattattagtagtgagtttaatgatatcaatgataa |
22898328 |
T |
|
| Q |
219 |
ccatgttggaattgatatcaatgatttgaaatcagctatttcaacttctacaggatattacgatgaatataatcgattcagggatttatcccttttcagt |
318 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||| || |||||||||| |||| || || | ||| | |||| ||||||||||| |
|
|
| T |
22898327 |
ccatgttggtattgatatcaatgatttgaaatcagctaaatcaactcctgcaggatattatgatgttaatggtcaactcaagaatttgacccttttcagt |
22898228 |
T |
|
| Q |
319 |
ggatatcccatgcaggtatggattgactatgatggagtgnnnnnnnngatagatgttactttagctccaatagatgctagtaataaaccaacacaacctt |
418 |
Q |
| |
|
|| |||| ||||||||||||||||| |||||||| | ||| |||||||||||||||||||| ||| | || |||||||| |||||||| |
|
|
| T |
22898227 |
ggcaatcctatgcaggtatggattgaatatgatggtgaaaagaaaaagattgatgttactttagctccaattaatg-ttgt--taaaccaaaacaacctt |
22898131 |
T |
|
| Q |
419 |
tgttatcattgaccaaagatctttctccaatt |
450 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| |
|
|
| T |
22898130 |
tgttgtcattgaccagagatctttctccaatt |
22898099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 22 - 451
Target Start/End: Complemental strand, 22815288 - 22814853
Alignment:
| Q |
22 |
ataagacctcaatatccaactattagtggtgatggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttggtc |
121 |
Q |
| |
|
|||||||||||||||||| || ||||||| | ||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
22815288 |
ataagacctcaatatccaccttttagtggccaaggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaagtcaataccttggtc |
22815189 |
T |
|
| Q |
122 |
tctttaacaattcaaacaatggaaacagtagcaaccatgtttttggtgttgaacttgattct-gttttgactaatg-agtttaatgatatcgatgataac |
219 |
Q |
| |
|
|||||||| |||| |||||||||||||||| ||||||||||||||||||||| ||||| || || || | || ||||| |||||||| |||||||| |
|
|
| T |
22815188 |
tctttaacgattccaacaatggaaacagtaacaaccatgtttttggtgttgagcttgacactcgtcaagatt--tgcagtttgatgatatcaatgataac |
22815091 |
T |
|
| Q |
220 |
catgttggaattgatatcaatgatttgaaatcagctatttcaacttctacaggatattacgatgaatataatcgattcagggatttatcccttttcagtg |
319 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||||||| ||||||| || |||||||||| |||| || || ||||||||| |||||||||| || || |
|
|
| T |
22815090 |
catgttggtatcgatatcaattatttgaaatcagctaattcaactcctgcaggatattataatgatcatggtcaattcagggagttatccctttccaatg |
22814991 |
T |
|
| Q |
320 |
gatatcccatgcaggtatggattgactatgatggagtgnnnnnnnngatagatgttactttagctccaa------tagatgctagtaataaaccaacaca |
413 |
Q |
| |
|
||| ||| || ||||||||||||||||||||||||||| ||| ||||||||||||||||||| | | ||||||||||||||||||||| |
|
|
| T |
22814990 |
gatttcctatacaggtatggattgactatgatggagtgaagaaaaagattgatgttactttagctccaatgagtgttggtgctagtaataaaccaacaca |
22814891 |
T |
|
| Q |
414 |
acctttgttatcattgaccaaagatctttctccaattc |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22814890 |
acctttgttatcattgaccaaagatctttcttcaattc |
22814853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 34 - 451
Target Start/End: Complemental strand, 22831280 - 22830857
Alignment:
| Q |
34 |
tatccaactattagtggtgatggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttggtctctttaacaatt |
133 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| | | |
|
|
| T |
22831280 |
tatccatctattagtggccatggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactact |
22831181 |
T |
|
| Q |
134 |
caaacaatggaaacagtagcaaccatgtttttggtgttgaacttgattctgttttgactaatgagtttaatgatatcgatgataaccatgttggaattga |
233 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||| ||||| || | | | ||||||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
22831180 |
ccaacattggaaacagtagcaaccatgtttttggtgttgagcttgacactcgtaaaaattttgagtttgatgatatcaatgataatcatgttggaattga |
22831081 |
T |
|
| Q |
234 |
tatcaatgatttgaaatcagctatttcaacttctacaggatattacgatgaatataatcgattcagggatttatcccttttcagtggatatcccatgcag |
333 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||||| ||||| | |||||||||| ||||||||||| ||||||| |||| |||||| |
|
|
| T |
22831080 |
tatcaatgatttgaaatcagctaattcaactcctgcaggatattatgatgatactggtcgattcaggaatttatcccttaccagtggacatcctatgcag |
22830981 |
T |
|
| Q |
334 |
gtatggattgactatgatggagtgnnnnnnnngatagatgttactttagctcca------atagatgctagtaataaaccaacacaacctttgttatcat |
427 |
Q |
| |
|
||||||||||| |||||||||||| ||| |||||||| ||||||||| | | | |||| |||||||||||||||| |||||||| |
|
|
| T |
22830980 |
gtatggattgaatatgatggagtgaagaaaaagattgatgttaccttagctccagttagtgttggttttagtcataaaccaacacaaccgacgttatcat |
22830881 |
T |
|
| Q |
428 |
tgaccaaagatctttctccaattc |
451 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
22830880 |
tgaccaaagatctttccccaattc |
22830857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 22894208 - 22893779
Alignment:
| Q |
19 |
gccataagacctcaatatccaactattagtggtgatggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttg |
118 |
Q |
| |
|
|||||||||| |||| ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| | | || |||||||| |
|
|
| T |
22894208 |
gccataagacatcaaggtccaacttatagtggccatggaattgtttttgttctttctcctacaaaagggctaccaaattcactccaaggttcataccttg |
22894109 |
T |
|
| Q |
119 |
gtctctttaacaattcaaacaatggaaacagtagcaaccatgtttttggtgttgaacttgattctgttttgactaatgagtttaatgatatcgatgataa |
218 |
Q |
| |
|
|||||||| || |||| ||||||||||| ||||||||| ||||||||||||||||||||| || || | | ||||||| |||||||| ||||||| |
|
|
| T |
22894108 |
gtctctttgacgattccaacaatggaaatcctagcaaccacgtttttggtgttgaacttgatactattgaaaatcgtgagtttgatgatatcaatgataa |
22894009 |
T |
|
| Q |
219 |
ccatgttggaattgatatcaatgatttgaaatcagctatttcaacttctacaggatattacgatgaatataatcgattcagggatttatcccttttcagt |
318 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||| || |||||||||| |||| || || ||||| | || || |||| ||||| |
|
|
| T |
22894008 |
ccatgttggtattgatatcaatgatttgaaatcagctaattcaactcctgcaggatattatgatggtaatggtcaattcaagaatataagccttatcagt |
22893909 |
T |
|
| Q |
319 |
ggatatcccatgcaggtatggattgactatgatggagtgnnnnnnnngatagatgttactttagctccaatagatgctagtaataaaccaacacaacctt |
418 |
Q |
| |
|
|| ||||| ||||||||||||||||| |||||||| | ||| |||||||||||||||||||| ||| | || |||||||| |||||||| |
|
|
| T |
22893908 |
ggctatcctatgcaggtatggattgaatatgatggtgaaaagaaaaagattgatgttactttagctccaattaatg-ttgt--taaaccaaaacaacctt |
22893812 |
T |
|
| Q |
419 |
tgttatcattgaccaaagatctttctccaattc |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
22893811 |
tgttatcattgaccaaagatctttctccaattc |
22893779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 22809908 - 22809467
Alignment:
| Q |
19 |
gccataagacctcaatatccaactattagtggtgatggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttg |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||||| ||||| ||| | || ||||||| |||| |
|
|
| T |
22809908 |
gccataagacctcaatatccaactcttagttcccatggaattgtatttgttgtttcacctacaaaagggctgccaaattcaaaagcaagtcaatatcttg |
22809809 |
T |
|
| Q |
119 |
gtctctttaacaattcaaacaatggaaacagtagcaaccatgtttttggtgttgaacttgattctgttttgactaatgagtttaatgatatcgatgataa |
218 |
Q |
| |
|
||||||||||| | || ||||||||||||||||| ||||||||||| ||||||||||| ||| || || | | || ||||||| |||||||| ||||||| |
|
|
| T |
22809808 |
gtctctttaaccaatccaacaatggaaacagtagtaaccatgttttcggtgttgaactagatactcttctaagtagtgagtttgatgatatcaatgataa |
22809709 |
T |
|
| Q |
219 |
ccatgttggaattgatatcaatgatttgaaatcagctatttcaacttctacaggatattacgatgaatataatcgattcagggatttatcccttttcagt |
318 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| ||||||| || |||||||||| ||| || || ||||| | || | |||||||||| |
|
|
| T |
22809708 |
ccatattggtattgatatcaatgatttgaaatcagctaattcaactcctgcaggatattatgatagtaatggtcaattcaagaatatgagccttttcagt |
22809609 |
T |
|
| Q |
319 |
ggatatcccatgcaggtatggattgactatgatggagtgnnnnnnnngatagatgttactttagctccaatagatgctag---taa------taaaccaa |
409 |
Q |
| |
|
|| ||||| ||||| ||||||||||| |||||||| | ||| |||| ||||||||||||||| ||| | | ||| |||||||| |
|
|
| T |
22809608 |
ggctatcctatgcatgtatggattgaatatgatggtgaaaagaaaaagattgatgctactttagctccaattaatgttggttttaatgttgttaaaccaa |
22809509 |
T |
|
| Q |
410 |
cacaacctttgttatcattgaccaaagatctttctccaattc |
451 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22809508 |
cacgacctttgttatcattcaccaaagatctttctccaattc |
22809467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 32 - 324
Target Start/End: Complemental strand, 22885843 - 22885556
Alignment:
| Q |
32 |
aatatccaactattagtggtgatggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttggtctctttaacaa |
131 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||| |||| |||||||||||||||||||| ||||||| | | |||||||||||||| |||||| |
|
|
| T |
22885843 |
aatatccaactcatagtggccatggaattgtttttgttatttcacctacaaaagggctaccaaattcactacaatattaataccttggtctc--taacaa |
22885746 |
T |
|
| Q |
132 |
ttcaaacaatggaaacagtagcaaccatgtttttggtgttgaacttgattctgttttgactaatgagtttaatgatatcgatgataaccatgttggaatt |
231 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||| |||| ||||| ||| | | | ||||||| |||| ||| ||||||||||| |||| ||| |
|
|
| T |
22885745 |
ttccaacaatggaaacagtagcagccatgtttttggtattgagcttgacactgatcaaaattttgagtttgatgaaatcaatgataaccatattggtatt |
22885646 |
T |
|
| Q |
232 |
gatatcaatgatttgaaatcagctatttcaacttctacaggatattacgatgaatataatcgattcagggatttatcccttttcagtggatat |
324 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || |||||||||| |||| || || |||||||| |||||||||||| |||||||||| |
|
|
| T |
22885645 |
gatatcaatgatttgaaatcagctaattcaactcctgcaggatattatgatg---attatggattcaggaatttatccctttccagtggatat |
22885556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 22805573 - 22805144
Alignment:
| Q |
19 |
gccataagacctcaatatccaactattagtggtgatggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttg |
118 |
Q |
| |
|
||||||| ||||||||||||| || ||| ||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
22805573 |
gccataatacctcaatatccaccttttactggccatggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttg |
22805474 |
T |
|
| Q |
119 |
gtctctttaacaattcaaacaatggaaacagtagcaaccatgtttttggtgttgaacttgattctgttttgactaatgagtttaatgatatcgatgataa |
218 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||| || | | ||||||| |||| | || |||| |
|
|
| T |
22805473 |
gtctctttaatgattccaacaatggaaacagtggcaaccatgtttttggtgttgaacttgacacttctaaagattttgagtttggtgatgttgacaataa |
22805374 |
T |
|
| Q |
219 |
ccatgttggaattgatatcaatgatttgaaatcagctatttcaacttctacaggatattacgatgaatataatcgattcagggatttatcccttttcagt |
318 |
Q |
| |
|
||| | ||| ||| ||||||||||| ||||||||| | | |||||| || ||| ||||||||||| || || | |||| || ||||| |||| |
|
|
| T |
22805373 |
ccacgatggtattaatatcaatgatctgaaatcagttgtctcaactactgcagcctattacgatgatcatggtcaaatcagaacagtagacctttccagt |
22805274 |
T |
|
| Q |
319 |
ggatatcccatgcaggtatggattgactatgatggagtgnnnnnnnngatagatgttactttagctccaatagatgctagtaataaaccaacacaacctt |
418 |
Q |
| |
|
||| |||| || |||||||||||||| |||||||||||| ||| |||||||||||||||||| | ||| | || |||||||||| ||||| |
|
|
| T |
22805273 |
ggaaatcctatacaggtatggattgattatgatggagtgaagaaaaagattgatgttactttagctccagtttatg-ttgt--taaaccaacaggacctt |
22805177 |
T |
|
| Q |
419 |
tgttatcattgaccaaagatctttctccaattc |
451 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |
|
|
| T |
22805176 |
cgttatcaatgaccaaagatctttctccaattc |
22805144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 232 - 451
Target Start/End: Complemental strand, 22880642 - 22880417
Alignment:
| Q |
232 |
gatatcaatgatttgaaatcagctatttcaacttctacaggatattacgatgaatataatcgattcagggatttatcccttttcagtggatatcccatgc |
331 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||| |||||||||| ||||| ||| ||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
22880642 |
gatatcaatgatttgaaatcagtaaattcaatttctgcaggatattatgatgattatgatcgattcaaggatttatccctttccagtggatatcccatgc |
22880543 |
T |
|
| Q |
332 |
aggtatggattgactatgatggagtgnnnnnnnngatagatgttactttagctccaa------tagatgctagtaataaaccaacacaacctttgttatc |
425 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || ||||| |||||||| | | | | || |||||||||||||| || |||||| || |
|
|
| T |
22880542 |
aggtatggattgactatgatggagtgaagaaaaagattgaggttacattagctccgattagtgttggttttaataataaaccaacacgacatttgttgtc |
22880443 |
T |
|
| Q |
426 |
attgaccaaagatctttctccaattc |
451 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
22880442 |
attgaccaaagatctttctccaattc |
22880417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 44 - 253
Target Start/End: Complemental strand, 22913907 - 22913698
Alignment:
| Q |
44 |
ttagtggtgatggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttggtctctttaacaattcaaacaatgg |
143 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||| |||||||||||||||| || || | ||||||||||| |
|
|
| T |
22913907 |
ttagtggccatggaattgtttttgttctttctccaacaaaagggttaccaaattcactaccaagtcaataccttggtctattcaatgaatcaaacaatgg |
22913808 |
T |
|
| Q |
144 |
aaacagtagcaaccatgtttttggtgttgaacttgattctgttttgactaatgagtttaatgatatcgatgataaccatgttggaattgatatcaatgat |
243 |
Q |
| |
|
||||| | ||||||||||||||| | || |||||| || || ||| || ||||| |||||||| |||| ||||||||||||||||||||||||| | |
|
|
| T |
22913807 |
aaacaacaataaccatgtttttggtttggagcttgatactattatgaatacggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggt |
22913708 |
T |
|
| Q |
244 |
ttgaaatcag |
253 |
Q |
| |
|
|||||||||| |
|
|
| T |
22913707 |
ttgaaatcag |
22913698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 22842364 - 22842264
Alignment:
| Q |
71 |
tttctcctacaaaagggctaccaaactcactaccacgtcaataccttggtctctttaacaattcaaacaatggaaacagtagcaaccatgtttttggtgt |
170 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22842364 |
tttcacctacaaaagggcaaccaaattcactaccaggtcaataccttggtctctttaacaattccaacaatggaaatagtagcaaccatgtttttggtgt |
22842265 |
T |
|
| Q |
171 |
t |
171 |
Q |
| |
|
| |
|
|
| T |
22842264 |
t |
22842264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 80 - 357
Target Start/End: Complemental strand, 22858665 - 22858388
Alignment:
| Q |
80 |
caaaagggctaccaaactcactaccacgtcaataccttggtctctttaacaattcaaacaatggaaacagtagcaaccatgtttttggtgttgaacttga |
179 |
Q |
| |
|
|||||||||||||| | ||||| ||| ||||||||||||| ||||||| |||| |||| |||||||| |||||||||||| |||| |||||| ||||| |
|
|
| T |
22858665 |
caaaagggctaccagattcacttccaaaccaataccttggtccctttaacgattccaacattggaaacactagcaaccatgtgtttgctgttgagcttga |
22858566 |
T |
|
| Q |
180 |
ttctgttttgactaatgagtttaatgatatcgatgataaccatgttggaattgatatcaatgatttgaaatcagctatttcaacttctacaggatattac |
279 |
Q |
| |
|
|| || | ||||||| |||||||| || ||||||||| ||| ||||| |||||| ||||||||||||||| ||||||| || ||||||| || |
|
|
| T |
22858565 |
cactattcaagatcttgagtttgatgatatcaataataaccatgctggtattgacatcaataatttgaaatcagctaattcaactcctgcaggatactat |
22858466 |
T |
|
| Q |
280 |
gatgaatataatcgattcagggatttatcccttttcagtggatatcccatgcaggtatggattgactatgatggagtg |
357 |
Q |
| |
|
||| | |||||||| || |||||||||| ||||||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
22858465 |
aatgctattggtcgattcaacgacttatccctttctagtggatatcctatgcaggtatggatagaatatgatggagtg |
22858388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 22880794 - 22880674
Alignment:
| Q |
53 |
atggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttggtctctttaacaattcaaacaatggaaacagtag |
152 |
Q |
| |
|
||||| |||||||||||||||| || ||||||||||||||||| || |||||| || ||||||||||||||||| ||| || |||| |||||||| ||| |
|
|
| T |
22880794 |
atggacttgtttttgttgtttcaccaacaaaagggctaccaaattcgctaccaagtaaataccttggtctctttgacactttcaacactggaaacattag |
22880695 |
T |
|
| Q |
153 |
caaccatgtttttggtgttga |
173 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
22880694 |
caaccatgtttttgctgttga |
22880674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 396 - 449
Target Start/End: Complemental strand, 22885506 - 22885453
Alignment:
| Q |
396 |
tagtaataaaccaacacaacctttgttatcattgaccaaagatctttctccaat |
449 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22885506 |
tagtgataaaccaacacaacctttgttatcattgaccaaagatctttctccaat |
22885453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 451
Target Start/End: Complemental strand, 22913578 - 22913500
Alignment:
| Q |
370 |
gatgttactttagctccaatagatgctagtaataaaccaacacaacctttgttatcattgaccaaagatctttctccaattc |
451 |
Q |
| |
|
|||||||||||||||||||| ||| | || |||||||| |||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
22913578 |
gatgttactttagctccaattaatgtt-gt--taaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattc |
22913500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 450
Target Start/End: Complemental strand, 22826162 - 22826085
Alignment:
| Q |
370 |
gatgttactttagctccaatagatgctagtaataaaccaacacaacctttgttatcattgaccaaagatctttctccaatt |
450 |
Q |
| |
|
|||||||||||||||||||| ||| | || |||||||| |||||||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
22826162 |
gatgttactttagctccaattaatgtt-gt--taaaccaaaacaacctttgttttcattgaccagagatcttcctccaatt |
22826085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 22858334 - 22858285
Alignment:
| Q |
402 |
taaaccaacacaacctttgttatcattgaccaaagatctttctccaattc |
451 |
Q |
| |
|
||||||| ||| ||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
22858334 |
taaaccagcacgacctttgttatcattcacgaaagatctttctccaattc |
22858285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 21150450 - 21150784
Alignment:
| Q |
19 |
gccataagacctcaatatccaactattagtggtgatggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttg |
118 |
Q |
| |
|
|||||||||||||||||||||||| || |||| ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||| |||||||||| |
|
|
| T |
21150450 |
gccataagacctcaatatccaactcttggtggccatggaattgtttttgttatttctcctacaaaagagctaccaaattcactaccaacacaataccttg |
21150549 |
T |
|
| Q |
119 |
gtctctttaacaattcaaacaatggaaacagtagcaaccatgtttttggtgttgaacttgattctgttttgactaatgagtttaatgatatcgatgataa |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| | ||||||| |||||||| || |||| |
|
|
| T |
21150550 |
gtctctttaacaattccaacaatggaaacagtagcaaccatgtttttggtgttgagcttgacactgttcaagattttgagtttgatgatatcaataataa |
21150649 |
T |
|
| Q |
219 |
ccatgttggaattgatatcaatgatttgaaatcagctatttcaacttctacaggatattacgatgaatataatcgattcagggatttatcccttttcagt |
318 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||| || || |||||| |||||||||||||||||| |
|
|
| T |
21150650 |
ccatgttggtattgatatcaatgatttgaaatcagctaactcaacttctgcaggctattatgatgataatgatggattcaatgatttatcccttttcagt |
21150749 |
T |
|
| Q |
319 |
ggatatcccatgcaggtatggattgactatgatgg |
353 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
21150750 |
ggatatcctatgcatgtatggattgaatatgatgg |
21150784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 414 - 447
Target Start/End: Original strand, 21150851 - 21150884
Alignment:
| Q |
414 |
acctttgttatcattgaccaaagatctttctcca |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
21150851 |
acctttgttatcattgaccaaagatctttctcca |
21150884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 3741480 - 3741560
Alignment:
| Q |
153 |
caaccatgtttttggtgttgaacttgattctgttttgactaatgagtttaatgatatcgatgataaccatgttggaattga |
233 |
Q |
| |
|
||||||||||||||||||||| ||||| | || ||| | | ||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
3741480 |
caaccatgtttttggtgttgagtttgatgtttttatgaatcaagagtttaatgatatcaatgctaaccatgttggaattga |
3741560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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