View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18819_low_9 (Length: 444)
Name: NF18819_low_9
Description: NF18819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18819_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 98518 - 98099
Alignment:
| Q |
18 |
cagtggtgtttcctaatgtgcttgatcttgttgtcatgggttccatttaataagtctcctttatgggtgcccctaatatggtccctattttcaagggtgc |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
98518 |
cagtggtgtttcctaatgtgcttgatcttgttgtcatgggttccatttaataagtcttctttatgggtgcccctaatatggtccctatttttaagggtgc |
98419 |
T |
|
| Q |
118 |
actcatagtccccttaaaatgaccttcaatagtagattgcnnnnnnnnttgtattttgtcccacataacnnnnnnnnngtaagttgaataattactttta |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
98418 |
actcgtagtccccttaaaatgaccttcaatagtatattgcaaaaaaaattgtattttgtcccacataacaaaaaaaaagtaagttgaataattactttta |
98319 |
T |
|
| Q |
218 |
cgccctttgatgtaagccataaattctaagtgtagaacataaccattttcttcatctcgttctcaatcttcattgcccagaagcattttcttccttccac |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
98318 |
cgccctttgatgtaagccataaattctaagtgtagaacataaccattttcttcatctcgttctcaatcttcattgcccagaagcattttcttccttccac |
98219 |
T |
|
| Q |
318 |
tctctccgtgttaattgccaaactcatggctacttcttctatcaaatattcaccttcaccaatcacgacacgctactccatttaaccaatataatatatg |
417 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
98218 |
tctctctgtgttaattgccaaactcatggctacttcttctatcaaatattcaccttcaccaatcacgacacgctactccatttaaccaatataatatatg |
98119 |
T |
|
| Q |
418 |
aatttcttgttgtacctttg |
437 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
98118 |
aatttcttgttgtacctttg |
98099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 50638856 - 50638791
Alignment:
| Q |
82 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaat |
147 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||| ||||| | ||||||||||||||| |
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|
| T |
50638856 |
gggtgcccctaatatggtccctatttttaagggtgcacccatggtcccttcaaaatgaccttcaat |
50638791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 50637966 - 50638024
Alignment:
| Q |
82 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgac |
140 |
Q |
| |
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||||||| |||| |||||||||||||| |||||||||||||| ||||| |||||||||| |
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| T |
50637966 |
gggtgcctctaacatggtccctatttttaagggtgcactcatggtccctttaaaatgac |
50638024 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 97621 - 97654
Alignment:
| Q |
82 |
gggtgcccctaatatggtccctattttcaagggt |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
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|
| T |
97621 |
gggtgcccctaatatggtccctatttttaagggt |
97654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 24975424 - 24975388
Alignment:
| Q |
311 |
cttccactctctccgtgttaattgccaaactcatggc |
347 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
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|
| T |
24975424 |
cttccactctctctatgttaattgccaaactcatggc |
24975388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 78 - 437
Target Start/End: Original strand, 24948394 - 24948765
Alignment:
| Q |
78 |
ttatgggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatagtagattgcnnnnnnnn-ttgtattttgt |
176 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
24948394 |
ttatgggtgcttctaatatggtccctatttttaagggtgcattcatggtccccttaaaatgaccttcaatagtagattgcaaaaaaaaattgtattttgt |
24948493 |
T |
|
| Q |
177 |
cccacataacnnnnnnnnn---gtaagttgaataattacttttacgccctttgatgtaagccataaa-ttctaagtgtagaacataaccattttcttcat |
272 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||| | ||||||||||||| | |
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|
| T |
24948494 |
cccacataacaaaaaaaaaaaagtaagttgagtaattacttttacgccctttgatgtaagccttaaaattccaagtgtagaaaagaaccattttcttcct |
24948593 |
T |
|
| Q |
273 |
ctcgttctcaatcttcattgcccagaagcattttcttccttccactctctccgtgttaattgccaaactcatggctacttcttctatcaaatattcacct |
372 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24948594 |
ctcgttctcaatcttcattgcctagaagcattttcttccttccactctctctgtgttaattgccaaactcatggctacttcttctatcaaatactcacct |
24948693 |
T |
|
| Q |
373 |
tcaccaatcacgacacgctactccatt-------taaccaatataatatatgaatttcttgttgtacctttg |
437 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
24948694 |
tcaccaatcaccacacgctactccatttaacccataacccatataatatatgaatttcttgttgtacctttg |
24948765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 24949252 - 24949185
Alignment:
| Q |
82 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatag |
149 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||| ||| ||||| ||||||| ||||||||||| |
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| T |
24949252 |
gggtggccctaatatggtccctatttttaagggtgcacccatggtccctttaaaataaccttcaatag |
24949185 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 79 - 437
Target Start/End: Original strand, 40828778 - 40829144
Alignment:
| Q |
79 |
tatgggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatagtagattgcnnnnnnnnttgtattttgtcc |
178 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40828778 |
tatgggtgcatctaatatggtccctatttttaagggtgcattcag-gtccccttaaaatgaccttcaatagtagattgaaaaaaaaattgtattttgtcc |
40828876 |
T |
|
| Q |
179 |
cacataacnnnnnnnnn-gtaagttgaataattacttttacgccctttgatgtaagccataaattct-aagtgtagaacataaccattttcttcatctcg |
276 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||| |||| | | |||||||||||| ||||||||||||| ||||| |
|
|
| T |
40828877 |
cacataacaaaaaaaaaagtaagttgagtaattacttttacgccctttgatgtaagccttaaaatttcaagtgtagaacaaaaccattttcttcctctcg |
40828976 |
T |
|
| Q |
277 |
ttctcaatcttcattgcccagaagcattttcttccttccactctctccgtgttaattgccaaactcatggctacttcttctatcaaatattcaccttcac |
376 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
40828977 |
ttctcaatcttcattgcctagaagcattttcttccttccactctctctgtgttaattgccaaactcatggctacttcttctatcaaatactcaccttcac |
40829076 |
T |
|
| Q |
377 |
caatcacgacacgctactccatt-------taaccaatataatatatgaatttcttgttgtacctttg |
437 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
40829077 |
caatcaccacacgctactccatttaacccataacccatataatatatgaatttcttgttgtacctttg |
40829144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 40829630 - 40829563
Alignment:
| Q |
82 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatag |
149 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||| ||||||||||| |
|
|
| T |
40829630 |
gggtgcccctaatatggtccctatttttaagggtgcacccatggtccctttaaaataaccttcaatag |
40829563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 81 - 437
Target Start/End: Complemental strand, 11744917 - 11744551
Alignment:
| Q |
81 |
tgggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatagtagattgcnnnnnnnn-ttgtattttgtccc |
179 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||| | |||| |||||||||||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
11744917 |
tgggtgcttctaatatggtccctatttttaagggtgtattcatggtccccttaaaatgaccttcaacagtagattgcaaaaaaaaattgtattttgtccc |
11744818 |
T |
|
| Q |
180 |
acataacnnnnnnnnn-gtaagttgaataattacttttacgccctttgatgtaagccataaa-ttctaagtgtagaacataaccattttcttcatctcgt |
277 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
11744817 |
acataacaaaaaaaaaagtaagttgagtaattacttttacgccctttgatgtaagccttaaaattccaagtgtagaacagaaccattttcttcctctcgc |
11744718 |
T |
|
| Q |
278 |
tctcaatcttcattgcccagaagcattttcttccttccactctctccgtgttaattgccaaactcatggctacttcttctatcaaatattcaccttcacc |
377 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
11744717 |
tttcaatcttcattgcctagaagcattttcttccttccactctctctgtgttaattgccaaactcatggttacttcttctatcaaatactcaccttcacc |
11744618 |
T |
|
| Q |
378 |
aatcacgacacgctactccattt-------aaccaatataatatatgaatttcttgttgtacctttg |
437 |
Q |
| |
|
|||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11744617 |
aatcaccacacgctactccatttaacccataacccatataatatatgaatttcttgttgtacctttg |
11744551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 11744065 - 11744132
Alignment:
| Q |
82 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatag |
149 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||| ||||||||||| |
|
|
| T |
11744065 |
gggtgcccctaatatggtccctatttttaagggtgcacccatggtccctttaaaataaccttcaatag |
11744132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 16798290 - 16798225
Alignment:
| Q |
82 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaat |
147 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||| ||||| | ||||||||||||||| |
|
|
| T |
16798290 |
gggtgcccctaatatggtccctatttttaagggtgcacccatggtcccttcaaaatgaccttcaat |
16798225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 16797400 - 16797458
Alignment:
| Q |
82 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgac |
140 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
16797400 |
gggtgcctctaacatggtccctatttttaagggtgcactcatggtccctttaaaatgac |
16797458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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