View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1881_high_1 (Length: 412)

Name: NF1881_high_1
Description: NF1881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1881_high_1
NF1881_high_1
[»] chr3 (32 HSPs)
chr3 (12-403)||(22457986-22458377)
chr3 (12-403)||(22480967-22481358)
chr3 (12-259)||(22436128-22436375)
chr3 (12-259)||(22467448-22467695)
chr3 (12-259)||(22635003-22635250)
chr3 (12-259)||(22357499-22357746)
chr3 (12-259)||(22629940-22630185)
chr3 (12-259)||(22430667-22430914)
chr3 (12-268)||(22442239-22442495)
chr3 (12-259)||(22367421-22367668)
chr3 (12-230)||(22620381-22620599)
chr3 (12-259)||(30988790-30989037)
chr3 (12-122)||(37930357-37930467)
chr3 (16-259)||(22353313-22353557)
chr3 (12-238)||(22656551-22656777)
chr3 (202-253)||(22180157-22180208)
chr3 (12-119)||(22647669-22647776)
chr3 (12-253)||(21946364-21946605)
chr3 (197-253)||(21937893-21937949)
chr3 (205-253)||(22115825-22115873)
chr3 (320-403)||(22442550-22442633)
chr3 (306-403)||(22367718-22367815)
chr3 (346-403)||(22431004-22431061)
chr3 (197-253)||(22028740-22028796)
chr3 (197-253)||(22035257-22035313)
chr3 (197-253)||(22053446-22053502)
chr3 (197-253)||(22105448-22105504)
chr3 (197-253)||(22187728-22187784)
chr3 (306-389)||(22436425-22436508)
chr3 (88-174)||(22628096-22628182)
chr3 (197-253)||(21931161-21931217)
chr3 (205-253)||(22614949-22614997)
[»] chr1 (4 HSPs)
chr1 (12-172)||(2304971-2305131)
chr1 (12-164)||(34990046-34990198)
chr1 (12-119)||(34976245-34976352)
chr1 (12-119)||(34983356-34983463)
[»] chr5 (1 HSPs)
chr5 (16-161)||(40580766-40580911)


Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 403
Target Start/End: Original strand, 22457986 - 22458377
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22457986 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 22458085  T
Q  112 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacgaccttcaggatataatc 211  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  22458086 tcttccaatgtttttaccatatcatctttcacaaatccttcagccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataatc 22458185  T
Q  212 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaaccgagacctacaannnnnnnnatcttcaaatcttcttttaactctatatttag 311  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  22458186 caaaatacaacaaacatgacttgagattgtaagacagatcatggtaaccgagacctacaattttttttatcttcaaatcttcttttaactctatatttag 22458285  T
Q  312 aatttaactaaacttataccattctgatgtatctctatctttgcaagataaaataccaccaatgagtacaatttctagtggcaacccattgc 403  Q
    | ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  22458286 attttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggcaatccattgc 22458377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 403
Target Start/End: Original strand, 22480967 - 22481358
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22480967 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 22481066  T
Q  112 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacgaccttcaggatataatc 211  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  22481067 tcttccaatgtttttaccatatcatctttcacaaatccttcagccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataatc 22481166  T
Q  212 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaaccgagacctacaannnnnnnnatcttcaaatcttcttttaactctatatttag 311  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  22481167 caaaatacaacaaacatgacttgagattgtaagacagatcatggtaaccgagacctacaattttttttatcttcaaatcttcttttaactctatatttag 22481266  T
Q  312 aatttaactaaacttataccattctgatgtatctctatctttgcaagataaaataccaccaatgagtacaatttctagtggcaacccattgc 403  Q
    | ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  22481267 attttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggcaatccattgc 22481358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 22436128 - 22436375
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    ||||||||||| |||||||||| |||||||||||||||| ||||||||||| |||||||||| |||| ||| ||| ||| |||||||||| | ||||| |    
T  22436128 atcatgaacacgacaactttttactcttccatcaatacttattgaaactacatgcaccaaacttctattgaccaactctattaaatatccttttgcaata 22436227  T
Q  112 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacgaccttcaggatataatc 211  Q
    |||||||||||  || | || || ||||||||||| |||||||| |||||||| ||| ||||| | |||| | ||||||||    |||||||||||||||    
T  22436228 tcttccaatgtccttcccctctcttctttcacgaacccttcagcaatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatc 22436327  T
Q  212 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 259  Q
    |||||||||| ||||| |||||||| | ||||| ||||||||||||||    
T  22436328 caaaatacaagaaacacgacttgaggtagtaaggcaaatcatggtaac 22436375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 22467448 - 22467695
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    ||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||  |||||| ||| |||||||||| || |||||     
T  22467448 atcatgaacacgacaactttttactcttccatcaatacttattgaaactacttgcaccaaacttctatggatcaactctattaaatatccttcagcaacc 22467547  T
Q  112 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacgaccttcaggatataatc 211  Q
    |||||||||||  |  | || || || ||||| || |||||||| |||||||| ||| ||||  | |||| | ||||||||    |||||||||||||||    
T  22467548 tcttccaatgtcctccccctgtcttccttcacaaacccttcagcaatccattggcgagtcaacgtctttgaatgaactatatagtcttcaggatataatc 22467647  T
Q  212 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 259  Q
    |||||||||| |||||||||||||| |||||||  |||| ||||||||    
T  22467648 caaaatacaagaaacatgacttgaggttgtaaggtaaattatggtaac 22467695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 22635003 - 22635250
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    ||||||||| |  ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||  |||||| |||  ||||||||| ||||||||     
T  22635003 atcatgaacgcggcaactttttactcttccatcaatactagttgaaactacttgcaccaaacttctatggatcaactctactaaatatccttctgcaacc 22635102  T
Q  112 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacgaccttcaggatataatc 211  Q
    ||||| |||||  || | || || ||||||||||| |||||||| |||||||| ||| ||||| | |||| | ||||||||    |||||||||||||||    
T  22635103 tcttcaaatgtccttcccctgtcttctttcacgaacccttcagcaatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatc 22635202  T
Q  212 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 259  Q
    |||||||||| |||||||||||||| | | | | ||||||||||||||    
T  22635203 caaaatacaagaaacatgacttgaggtagcatggcaaatcatggtaac 22635250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 22357499 - 22357746
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    ||||||||||| ||||| |||| |||||||||||||||| |||||| ||||||||||||||| ||||   || || ||| |||||||||| ||||||||     
T  22357499 atcatgaacacgacaacgttttactcttccatcaatactgattgaatctacttgcaccaaacttctatgtattaactcttttaaatatccttctgcaacc 22357598  T
Q  112 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacgaccttcaggatataatc 211  Q
    |||||||  ||| || | | ||  | |||||| || |||||||| |||||||| ||| ||||| | |||| | ||||| ||    |||||||||||||||    
T  22357599 tcttccatcgttctttccccatattgtttcacaaacccttcagcaatccattgtcgagtcaatgtctttgaatgaactttatagtcttcaggatataatc 22357698  T
Q  212 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 259  Q
    |||||||||| |||||||||||||| | ||||| ||||||||||||||    
T  22357699 caaaatacaagaaacatgacttgaggtagtaaggcaaatcatggtaac 22357746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 22629940 - 22630185
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    |||||| |||| |||||||||| |||||||||  |||||  ||||||||||||||||||||| ||||| || ||| ||| |||||||||| ||| ||||     
T  22629940 atcatgtacacgacaactttttactcttccat--atacttgttgaaactacttgcaccaaacttctacggaccaactctattaaatatccttctccaacc 22630037  T
Q  112 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacgaccttcaggatataatc 211  Q
    |||||||||||| || |  |  | |||||||| || |||||||| |||||||| ||| |||| |  |||| | ||||||||    |||||||||| ||||    
T  22630038 tcttccaatgttcttcccttgacttctttcacaaacccttcagcgatccattggcgagtcaacacctttgaacgaactatatagtcttcaggatagaatc 22630137  T
Q  212 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 259  Q
    |||||||||| |||||||||||||| |||||||  |||||||||||||    
T  22630138 caaaatacaagaaacatgacttgaggttgtaaggtaaatcatggtaac 22630185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 22430667 - 22430914
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    ||||||||||| ||||||| || |||||||||||||||| |||||| ||||||||||||||| ||||  |||||| ||| |||||||||| ||||||||     
T  22430667 atcatgaacacgacaacttcttactcttccatcaatacttattgaatctacttgcaccaaacttctatggatcaactctattaaatatccttctgcaacc 22430766  T
Q  112 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacgaccttcaggatataatc 211  Q
    |||| ||||||  || |  | |  |||||||| || |||||||| |||||||| | | | ||| | |||| |  |||||||    ||| |||||||||||    
T  22430767 tctttcaatgtccttcccgttttttctttcacaaacccttcagcaatccattgacaagttaatgtctttgaataaactatatagtctttaggatataatc 22430866  T
Q  212 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 259  Q
    |||||||||| |||||||||||||| ||| ||| ||||||||||||||    
T  22430867 caaaatacaagaaacatgacttgaggttgcaaggcaaatcatggtaac 22430914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 22442239 - 22442495
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    |||||||||||  ||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||| ||| ||  || |||||||||| ||||||||     
T  22442239 atcatgaacacggcaactttttactcttccatcaatactggttgaaactacttgcaccaaacttctacagattaacacttttaaatatccttctgcaacc 22442338  T
Q  112 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacgaccttcaggatataatc 211  Q
    | |||||||||  || | | ||  |||||||| || |||||||| |||||||| ||| ||||| | |||| |  | ||  |    |||| ||||||||||    
T  22442339 ttttccaatgtcctttccccatattctttcacaaacccttcagctatccattgacgagtcaatgtctttgaacaagcttcatagtcttcgggatataatc 22442438  T
Q  212 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaaccgagaccta 268  Q
    |||||||||| |||||||||||||| ||| ||| |||||||||||||| ||| ||||    
T  22442439 caaaatacaagaaacatgacttgaggttgcaaggcaaatcatggtaactgagtccta 22442495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 22367421 - 22367668
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    |||||||||||  ||||| | | |||||||||||||| | ||   | ||||| ||||||||| ||||| |||||| ||| |||||| ||| ||||||||     
T  22367421 atcatgaacacggcaactgtctactcttccatcaatagtgatcccatctactcgcaccaaacttctacggatcaactctattaaatgtccttctgcaacc 22367520  T
Q  112 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacga-ccttcaggatataat 210  Q
    |||||||||||  || | || || |||||||| || |||||||| |||||||| ||| |||||||||||| | |||| ||  ||  ||||||||||||||    
T  22367521 tcttccaatgtcattcccctttcttctttcacaaacccttcagcaatccattgacgagtcaatatatttgaacgaac-atttgagtcttcaggatataat 22367619  T
Q  211 ccaaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 259  Q
    ||||| ||||| |||||||||||||| ||| ||| ||||||||||||||    
T  22367620 ccaaagtacaagaaacatgacttgaggttgcaaggcaaatcatggtaac 22367668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 22620381 - 22620599
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    ||||||||| ||||||||||||| | ||||||| || || | ||||  |||||||||||||| ||||  |||||| |||||||| ||||| ||||||||     
T  22620381 atcatgaacgcaacaactttttgtttttccatcgattcttagtgaagatacttgcaccaaacttctatggatcaactctgttaagtatccttctgcaact 22620480  T
Q  112 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacgaccttcaggatataatc 211  Q
    |||||||| || ||  | || || ||||| || || |||||||| |||||||||||||||||| | |||| |  |||| ||  | |||| ||||||||||    
T  22620481 tcttccaaagtattccccctttcttcttttacaaacccttcagctatccattgccgaatcaatctctttgaatcaactttataatcttctggatataatc 22620580  T
Q  212 caaaatacaacaaacatga 230  Q
    |||||||||| ||||||||    
T  22620581 caaaatacaataaacatga 22620599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 30988790 - 30989037
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    ||||||||||| ||||| ||| ||| | |||||||  ||||  |||  |||||||||||| | ||||  |||||| |||||||||||||| ||||||||     
T  30988790 atcatgaacacgacaacctttagctttaccatcaactctaaccgaagatacttgcaccaagcttctatggatcaactctgttaaatatccttctgcaacg 30988889  T
Q  112 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacgaccttcaggatataatc 211  Q
    |||||||| || ||  | || || || |||||||| |||||||| | |||||| ||||||||| | ||||    ||||  |  | |||| ||||||| ||    
T  30988890 tcttccaaagtcttccctctttcctccttcacgaacccttcagctacccattgtcgaatcaatctctttgatttaacttcataatcttctggatatattc 30988989  T
Q  212 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 259  Q
    ||||||||||||| ||||||||||||  ||||| |||||||| |||||    
T  30988990 caaaatacaacaagcatgacttgagagagtaaggcaaatcatcgtaac 30989037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 37930357 - 37930467
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    ||||||||||| |||||||||| |||||||||||||||   ||||||||||||||||||||| ||||| ||| || ||| |||||||||| || |||||     
T  37930357 atcatgaacacgacaactttttactcttccatcaataccggttgaaactacttgcaccaaacttctacagattaactcttttaaatatccttccgcaacc 37930456  T
Q  112 tcttccaatgt 122  Q
    | |||||||||    
T  37930457 ttttccaatgt 37930467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 22353313 - 22353557
Alignment:
Q  16 tgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatctt 115  Q
    ||||||| |||||||||| |||||||||||||||| | |||| ||||||||||||||| ||||  ||| || ||| |||||||||| |||||||| ||||    
T  22353313 tgaacacgacaactttttactcttccatcaatactgactgaatctacttgcaccaaacttctatggattaactcttttaaatatccttctgcaacctctt 22353412  T
Q  116 ccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacgaccttcaggatataatccaaa 215  Q
    ||| |||  || | |  |  |||||||| || || ||||| |||||||| ||| ||||| ||| || |  ||||       ||||  |||||||||||||    
T  22353413 ccattgtccttcccccgtattctttcacaaacccctcagcaatccattgacgagtcaatgtatctgaataaacttcgtagtcttcgagatataatccaaa 22353512  T
Q  216 atacaacaaacatgacttgagattgt-aagacaaatcatggtaac 259  Q
    |||||| |||||||||||||| | || ||| ||||||||||||||    
T  22353513 atacaagaaacatgacttgaggtagtaaaggcaaatcatggtaac 22353557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 238
Target Start/End: Original strand, 22656551 - 22656777
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    |||||| |||||||||||||| | | |||| ||||| |||| |||   |||||| ||||||| ||  |  ||||| |||||||||||||| ||||||||     
T  22656551 atcatggacacaacaacttttagtttttccgtcaattctaactgaggatacttgtaccaaacatcggcgaatcaactctgttaaatatccttctgcaact 22656650  T
Q  112 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacgaccttcaggatataatc 211  Q
    |||||||| |||||  | || || |||||||| || |||||||| ||||||||||| |||| | | ||||    ||||  |  | |||| ||||||| ||    
T  22656651 tcttccaaagttttccccctttcttctttcacaaaaccttcagctatccattgccgtatcactctctttgattcaacttcataatcttctggatatattc 22656750  T
Q  212 caaaatacaacaaacatgacttgagat 238  Q
    |||||||||||||||||||||| ||||    
T  22656751 caaaatacaacaaacatgacttaagat 22656777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 22180208 - 22180157
Alignment:
Q  202 ggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 253  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||    
T  22180208 ggatatactccaaaatacaacaaacatgacttgagatagtaaggcaaatcat 22180157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 22647669 - 22647776
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    |||||||||||| |||||||| | | |||||||||| |||| ||||  |||||| ||||||| ||||  |||||| || ||||||||||  ||||||||     
T  22647669 atcatgaacacagcaacttttagtttttccatcaattctaactgaagatacttgaaccaaacttctatggatcaactcagttaaatatcgttctgcaact 22647768  T
Q  112 tcttccaa 119  Q
    ||||||||    
T  22647769 tcttccaa 22647776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 21946605 - 21946364
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    ||||||||||| ||||| ||| ||| | |||||||| |||| ||||  |||||| ||||  | ||||  |||||| |||||||||||||| ||||| ||     
T  21946605 atcatgaacacgacaacctttagctttaccatcaattctaagtgaagatacttgaaccaggcttctatggatcaactctgttaaatatccttctgccact 21946506  T
Q  112 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacgaccttcaggatataatc 211  Q
    |||||||| || ||  | || || || ||||| || |||||||| |||||||| ||||||| | | || |    ||||  |  | |||| ||||||| ||    
T  21946505 tcttccaaagtcttccctctttcctccttcacaaacccttcagctatccattgtcgaatcactctcttcgatttaacttcataatcttctggatatactc 21946406  T
Q  212 caaaatacaacaaacatgacttgagattgtaagacaaatcat 253  Q
    ||||||| ||||| ||||||||||||| | ||| ||||||||    
T  21946405 caaaataaaacaagcatgacttgagatagcaaggcaaatcat 21946364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 21937949 - 21937893
Alignment:
Q  197 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 253  Q
    |||| ||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||    
T  21937949 cttctggatatactccaaaatacaacaagcatgacttgagatagtaaggcaaatcat 21937893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 22115873 - 22115825
Alignment:
Q  205 tataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 253  Q
    |||| ||||||||||||||||||||||||||||| ||||| ||||||||    
T  22115873 tatactccaaaatacaacaaacatgacttgagatagtaaggcaaatcat 22115825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 403
Target Start/End: Original strand, 22442550 - 22442633
Alignment:
Q  320 taaacttataccattctgatgtatctctatctttgcaagataaaataccaccaatgagtacaatttctagtggcaacccattgc 403  Q
    |||||| |||||||||   ||||| ||||||||||  || ||||||||||||||||| ||||||| ||||||| || |||||||    
T  22442550 taaactcataccattcaattgtatttctatctttgggagctaaaataccaccaatgactacaattgctagtggtaatccattgc 22442633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 403
Target Start/End: Original strand, 22367718 - 22367815
Alignment:
Q  306 atttagaatttaactaaacttataccattctgatgtatctctatctttgcaagataaaataccaccaatgagtacaatttctagtggcaacccattgc 403  Q
    ||||| | ||| |||||||||| |||||||   || ||  ||||||||||||| ||||||||||||||||| ||||||| | ||||| || |||||||    
T  22367718 atttatattttcactaaacttagaccattcaattggattcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggtaatccattgc 22367815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 403
Target Start/End: Original strand, 22431004 - 22431061
Alignment:
Q  346 ctatctttgcaagataaaataccaccaatgagtacaatttctagtggcaacccattgc 403  Q
    ||||||||||||| ||||||||||||||||| ||||||| | ||||| || |||||||    
T  22431004 ctatctttgcaagctaaaataccaccaatgactacaattgcgagtggtaatccattgc 22431061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 22028796 - 22028740
Alignment:
Q  197 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 253  Q
    |||| ||||||| ||||||||||||||| |||| |||||||| ||||| ||||||||    
T  22028796 cttctggatatactccaaaatacaacaagcatggcttgagatagtaaggcaaatcat 22028740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 22035313 - 22035257
Alignment:
Q  197 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 253  Q
    |||| ||||||| ||||||||||||||| |||| |||||||| ||||| ||||||||    
T  22035313 cttctggatatactccaaaatacaacaagcatggcttgagatagtaaggcaaatcat 22035257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 22053502 - 22053446
Alignment:
Q  197 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 253  Q
    |||| ||||||| ||||||||||||||| ||||||| ||||| ||||| ||||||||    
T  22053502 cttctggatatactccaaaatacaacaagcatgactcgagatagtaaggcaaatcat 22053446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 22105504 - 22105448
Alignment:
Q  197 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 253  Q
    |||| ||||||| |||||| |||||||| ||||||||||||| ||||| ||||||||    
T  22105504 cttctggatatactccaaagtacaacaagcatgacttgagatagtaaggcaaatcat 22105448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 22187784 - 22187728
Alignment:
Q  197 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 253  Q
    |||| ||||||| ||||||||||||||| |||| |||||||| ||||| ||||||||    
T  22187784 cttctggatatactccaaaatacaacaagcatggcttgagatagtaaggcaaatcat 22187728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 22436425 - 22436508
Alignment:
Q  306 atttagaatttaactaaacttataccattctgatgtatctctatctttgcaagataaaataccaccaatgagtacaatttctag 389  Q
    ||||| | ||| ||||||||| |||||||| |  | || |||||||||||||||||||| ||||||| ||| ||||||| ||||    
T  22436425 atttatattttcactaaacttgtaccattcagtaggatttctatctttgcaagataaaagaccaccagtgactacaattgctag 22436508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 22628096 - 22628182
Alignment:
Q  88 tctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaat 174  Q
    |||||||||||||| ||||  || ||||| || |||||| | || || |||||||| ||||||||||| ||| |||| |||||||||    
T  22628096 tctgttaaatatccttctgtgacttcttcgaaagtttttcccctttcttctttcacaaatccttcagctatcaattgtcgaatcaat 22628182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 21931217 - 21931161
Alignment:
Q  197 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 253  Q
    |||| ||||||| |||||||||||| || |||| |||||||| ||||| ||||||||    
T  21931217 cttctggatatactccaaaatacaagaagcatggcttgagatagtaaggcaaatcat 21931161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 22614949 - 22614997
Alignment:
Q  205 tataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 253  Q
    ||||||||||||||||||||||||||  | |||| ||||| ||||||||    
T  22614949 tataatccaaaatacaacaaacatgatctaagatagtaaggcaaatcat 22614997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 2304971 - 2305131
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    ||||||||||||||||||||| | | |||||||||| |||| |||   |||||||||||||| || ||  ||||| |||| ||||||||| ||||||||     
T  2304971 atcatgaacacaacaacttttagattttccatcaatgctaactgaggatacttgcaccaaacttcgacgaatcaactctgataaatatccttctgcaact 2305070  T
Q  112 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatca 172  Q
    |||||||| || ||  | || || || ||||| || |||||||| ||||| || |||||||    
T  2305071 tcttccaaagtcttcccactttcctccttcacaaacccttcagctatccactgtcgaatca 2305131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 34990198 - 34990046
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    ||||||||||||||||||| | | | |||||||||| |||| |||   |||||||||||||| |||||  ||||| |||||||||||||  ||| ||||     
T  34990198 atcatgaacacaacaacttctagtttttccatcaatgctaactgaggatacttgcaccaaacttctacgaatcaactctgttaaatatctttcttcaact 34990099  T
Q  112 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattg 164  Q
    |||||||| || ||  | || || |||||||| || |||||||| ||||||||    
T  34990098 tcttccaaagtcttcccactttcctctttcacaaacccttcagctatccattg 34990046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 34976352 - 34976245
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    ||||||||||||||||||||| |   |||||||||| |||| |||   |||||||||||||| || ||  ||||| |||||||||||||| | ||||||     
T  34976352 atcatgaacacaacaacttttaggctttccatcaattctaactgaggatacttgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaact 34976253  T
Q  112 tcttccaa 119  Q
    ||||||||    
T  34976252 tcttccaa 34976245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 34983463 - 34983356
Alignment:
Q  12 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 111  Q
    ||||||||||||||||||||| |   |||||||||| |||| |||   |||||||||||||| || ||  ||||| |||||||||||||| | ||||||     
T  34983463 atcatgaacacaacaacttttaggctttccatcaattctaactgaggatacttgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaact 34983364  T
Q  112 tcttccaa 119  Q
    ||||||||    
T  34983363 tcttccaa 34983356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 40580911 - 40580766
Alignment:
Q  16 tgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatctt 115  Q
    |||||| |||||||||| | | |||||||||| ||||||||   ||||||||||||||  | ||  ||||| || ||||||||| | || ||||| ||||    
T  40580911 tgaacaaaacaacttttagtttttccatcaattctaattgaggatacttgcaccaaactacgacgaatcaactcagttaaatatacttcagcaacttctt 40580812  T
Q  116 ccaatgtttttacgctatcatctttcacgaatccttcagccatcca 161  Q
    |||| || ||| | || || || ||||| || |||||||| |||||    
T  40580811 ccaaagtctttccactttcctccttcacaaacccttcagctatcca 40580766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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