View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1881_high_7 (Length: 236)
Name: NF1881_high_7
Description: NF1881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1881_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 49584299 - 49584521
Alignment:
| Q |
1 |
cctctttcctttgtgccttcaatggaagctggttaccaacaatgatcatcctctcttgagaaatggaggaaggagcatcagaaccaacactgttgttggt |
100 |
Q |
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| T |
49584299 |
cctctttcctttgtgccttcaatggaagctggttaccaacaatgatcatcctctcttgagaaatggaggaaggagcatcagaaccaacactgttgttggt |
49584398 |
T |
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| Q |
101 |
ttcatcatctaattcagatagcactccagcaacagttgccactctaggaagccttttcttttcgcgaccgaaagacggcgagccacatgaagtaagatct |
200 |
Q |
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| T |
49584399 |
ttcatcatctaattcagatagcactccagcaacagttgcaactctaggaagccttttcttttcgcgaccgaaagacggcgagccacatgaagtaagatct |
49584498 |
T |
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| Q |
201 |
aacaagttggaatatgaccttga |
223 |
Q |
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| T |
49584499 |
aacaagttggaatatgaccttga |
49584521 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 6935885 - 6935842
Alignment:
| Q |
180 |
gagccacatgaagtaagatctaacaagttggaatatgaccttga |
223 |
Q |
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| T |
6935885 |
gagccacatgaagtaagatctaacaagttagaatatgatcttga |
6935842 |
T |
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