View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1881_low_2 (Length: 371)
Name: NF1881_low_2
Description: NF1881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1881_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 44476363 - 44476099
Alignment:
| Q |
1 |
gatactaaaatttgttatattaaaaatattcttctagttctatgcaattaactaaaattagtgtccatatgtgtagtgtaagagacaaatattaattaat |
100 |
Q |
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| T |
44476363 |
gatactaaaatttgttatattaaaaatattct---agttctatgcaattaactaaaattagtgtccatatgtgtagtttaagagacaaatattaat---- |
44476271 |
T |
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| Q |
101 |
ctcataattaaaaataagatattaatttaacttgatcattcattttttataaagaaatatgtttannnnnnnagttattagctggtaaaaacaaacagta |
200 |
Q |
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| T |
44476270 |
ctcataattaaaaataagatattaatttaacttgatcattcattttttataaagaaatatgttta-tttcttagttattagctggtaaaaacaaacagca |
44476172 |
T |
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| Q |
201 |
attagaagcaaccttatttgagcctacctagctagccctaatacgtattacgctgcttctatatgcttcttga |
273 |
Q |
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| T |
44476171 |
attaaaagctatcttatttgagccaacctagctagccctaatacgtattatgcggtttctatatgcttattga |
44476099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 173 - 355
Target Start/End: Complemental strand, 44471571 - 44471388
Alignment:
| Q |
173 |
agttattagctggtaaaaacaaacagtaattagaa-gcaaccttatttgagcctacctagctagccctaatacgtattacgctgcttctatatgcttctt |
271 |
Q |
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| T |
44471571 |
agttattagctggtaaaaacaaacagtaattagaaaggaaccttattcgagcctacctagctagccctaatacgtattacactgcttctatatgcttctt |
44471472 |
T |
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| Q |
272 |
gacatttgatctttgacgaaatataataagcatattaattgattccagtaattaatagtgttcgcaataattgacgccaaaggg |
355 |
Q |
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| T |
44471471 |
gacatttgatctttgacgaaatataataagcatattaattaattctagtaattaatagtgttcgcaataattgacgccaaaggg |
44471388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 44471777 - 44471698
Alignment:
| Q |
1 |
gatactaaaatttgttatattaaaaatattcttctagttctatgcaattaactaaaattagtgtccatatgtgtagtgtaagagac |
86 |
Q |
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| T |
44471777 |
gatactagaatttgttatattaaaa----tattatagttctatgcaattaactaaaattagtctc--tatatgtagtgtaagagac |
44471698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 44485908 - 44485860
Alignment:
| Q |
258 |
tctatatgcttcttgac-atttgatctttgacgaaatataataagcata |
305 |
Q |
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| T |
44485908 |
tctatatgcttctggacgatttgatctttgacaaaatataatatgcata |
44485860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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