View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1881_low_6 (Length: 250)

Name: NF1881_low_6
Description: NF1881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1881_low_6
NF1881_low_6
[»] chr1 (7 HSPs)
chr1 (18-242)||(49292581-49292805)
chr1 (187-242)||(6242211-6242266)
chr1 (41-118)||(24516448-24516525)
chr1 (39-91)||(9210073-9210125)
chr1 (41-105)||(26803154-26803218)
chr1 (32-118)||(40110577-40110663)
chr1 (32-93)||(51217723-51217784)
[»] scaffold0046 (1 HSPs)
scaffold0046 (188-232)||(23922-23966)
[»] chr4 (8 HSPs)
chr4 (37-105)||(43418143-43418211)
chr4 (37-106)||(7989373-7989442)
chr4 (187-232)||(43894625-43894670)
chr4 (32-118)||(28655678-28655764)
chr4 (32-118)||(46795951-46796037)
chr4 (187-227)||(7989227-7989267)
chr4 (38-105)||(28103424-28103491)
chr4 (38-105)||(31711203-31711270)
[»] scaffold0084 (2 HSPs)
scaffold0084 (189-232)||(12755-12798)
scaffold0084 (32-93)||(11811-11872)
[»] chr5 (4 HSPs)
chr5 (32-118)||(8188125-8188211)
chr5 (32-93)||(1273194-1273255)
chr5 (32-105)||(12829675-12829748)
chr5 (32-105)||(12861654-12861727)
[»] chr3 (10 HSPs)
chr3 (37-91)||(7921595-7921649)
chr3 (32-118)||(31281077-31281163)
chr3 (32-118)||(55425527-55425613)
chr3 (37-118)||(32980377-32980458)
chr3 (37-93)||(8372566-8372622)
chr3 (42-93)||(45422115-45422166)
chr3 (32-93)||(17345415-17345476)
chr3 (187-232)||(25609286-25609331)
chr3 (37-105)||(26797429-26797497)
chr3 (37-105)||(48253043-48253111)
[»] chr8 (5 HSPs)
chr8 (32-93)||(16362524-16362585)
chr8 (37-118)||(36939958-36940039)
chr8 (32-118)||(22621059-22621145)
chr8 (48-105)||(37473974-37474031)
chr8 (37-105)||(38790191-38790259)
[»] chr7 (4 HSPs)
chr7 (32-105)||(35483679-35483752)
chr7 (187-242)||(40739064-40739119)
chr7 (37-118)||(17288167-17288248)
chr7 (40-93)||(25532257-25532310)
[»] chr2 (3 HSPs)
chr2 (32-105)||(4830613-4830686)
chr2 (38-105)||(3533564-3533631)
chr2 (38-105)||(7038278-7038345)
[»] chr6 (1 HSPs)
chr6 (187-231)||(29466269-29466313)
[»] scaffold1550 (1 HSPs)
scaffold1550 (187-225)||(451-489)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 49292581 - 49292805
Alignment:
Q  18 cgttgatcatattcgtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtatgcaatggtgaac 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49292581 cgttgatcatatttgtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtatgcaatggtgaac 49292680  T
Q  118 ccgccaacaccnnnnnnnnncttcatattcttcccttattcttcttcatcttcgtaccatctttatgagaaaaattaaaaacttaaattatgtttttaaa 217  Q
    |||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  49292681 ccgccaacacctttttttttcttcatattcttcccttattcttcttcatcttcgtaccatctttatgagaaaaattaaaaacttaaattatgttttaaaa 49292780  T
Q  218 aactcaatcttcatcacttcttctc 242  Q
    |||||||||||||||||||||||||    
T  49292781 aactcaatcttcatcacttcttctc 49292805  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 6242266 - 6242211
Alignment:
Q  187 aaaaattaaaaacttaaattatgtttttaaaaactcaatcttcatcacttcttctc 242  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||  |||||||||    
T  6242266 aaaaattttaaactcaaattatgtttttaaaaactcaatcttcatgtcttcttctc 6242211  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 24516448 - 24516525
Alignment:
Q  41 gttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtatgcaatggtgaacc 118  Q
    |||||| ||||| ||| ||| |||||||||||| ||| |||||||||||||||  ||||||||||  || ||||||||    
T  24516448 gttagttttttaatgtataaaattcttgatatgattttaaccatttgattgcatgtccattgtatttaacggtgaacc 24516525  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 9210125 - 9210073
Alignment:
Q  39 ccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattg 91  Q
    |||||||| ||||| ||||| |||||||||||||  |||||||||||||||||    
T  9210125 ccgttagttttttaatgtcttatattcttgatataatttcaaccatttgattg 9210073  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 26803218 - 26803154
Alignment:
Q  41 gttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtat 105  Q
    |||||| ||||| ||| ||| |||||||||||| ||| |||||||||||||||  ||||||||||    
T  26803218 gttagtattttaatgtataaaattcttgatatgattttaaccatttgattgcatgtccattgtat 26803154  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 40110663 - 40110577
Alignment:
Q  32 gtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtatgcaatggtgaacc 118  Q
    |||| ||| |||||| ||||| ||| ||| ||| |||||||| ||| |||||||||||||||  ||||||||||  || ||||||||    
T  40110663 gtcctctctgttagttttttaatgtataaaattattgatatgattttaaccatttgattgcatgtccattgtatttaacggtgaacc 40110577  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 51217723 - 51217784
Alignment:
Q  32 gtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgca 93  Q
    |||| |||||||||| ||||| || |||||||| |||||||  ||||||||||| |||||||    
T  51217723 gtcctctccgttagttttttaatgactaatatttttgatataatttcaaccattagattgca 51217784  T

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Target: scaffold0046 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 23922 - 23966
Alignment:
Q  188 aaaattaaaaacttaaattatgtttttaaaaactcaatcttcatc 232  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  23922 aaaattaaaaactgaaattatgtttttaaaaactcaatcttcatc 23966  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 43418143 - 43418211
Alignment:
Q  37 ctccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtat 105  Q
    |||||||||| ||||| ||||||||||| ||||| || |||||||||||||||||||| ||||| ||||    
T  43418143 ctccgttagtattttaatgtctaatatttttgatttgatttcaaccatttgattgcaagtccatcgtat 43418211  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 7989442 - 7989373
Alignment:
Q  37 ctccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtatg 106  Q
    |||||||||| |||||  |  ||||||||||||||||||||||  ||||||||||||| |||||||||||    
T  7989442 ctccgttagttttttaacgcttaatattcttgatatggtttcagtcatttgattgcaagtccattgtatg 7989373  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 43894625 - 43894670
Alignment:
Q  187 aaaaattaaaaacttaaattatgtttttaaaaactcaatcttcatc 232  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||    
T  43894625 aaaaaataaaaactgaaattatgtttttaaaaactcaatcttcatc 43894670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 28655678 - 28655764
Alignment:
Q  32 gtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtatgcaatggtgaacc 118  Q
    ||||||||||||||| ||||| || |||||||  | |||||| ||||| ||||| ||||||||  |||||||||| || ||||||||    
T  28655678 gtccactccgttagttttttaatgcctaatatcttagatatgatttcagccattagattgcaagaccattgtatgtaacggtgaacc 28655764  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 46796037 - 46795951
Alignment:
Q  32 gtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtatgcaatggtgaacc 118  Q
    |||| |||||||||| ||||| |||||||  || |||||||| ||| |||||||||||||||  ||||||||||  ||| |||||||    
T  46796037 gtcctctccgttagttttttaatgtctaaattttttgatatgattttaaccatttgattgcatgtccattgtatttaatagtgaacc 46795951  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 7989267 - 7989227
Alignment:
Q  187 aaaaattaaaaacttaaattatgtttttaaaaactcaatct 227  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  7989267 aaaaattaaaatctcaaattatgtttttaaaaactcaatct 7989227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 28103491 - 28103424
Alignment:
Q  38 tccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtat 105  Q
    |||||| || ||||| ||| || |||| ||||||| |||||||||||| |||||||| ||||||||||    
T  28103491 tccgtttgttttttaatgtttactatttttgatattgtttcaaccattcgattgcaagtccattgtat 28103424  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 31711203 - 31711270
Alignment:
Q  38 tccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtat 105  Q
    |||||| || ||||| ||| || |||| ||||||| |||||||||||| |||||||| ||||||||||    
T  31711203 tccgtttgttttttaatgtttactatttttgatattgtttcaaccattcgattgcaagtccattgtat 31711270  T

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Target: scaffold0084 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 12798 - 12755
Alignment:
Q  189 aaattaaaaacttaaattatgtttttaaaaactcaatcttcatc 232  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  12798 aaattaaaaactgaaattatgtttttaaaaactcaatcttcatc 12755  T

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Target: scaffold0084; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 11811 - 11872
Alignment:
Q  32 gtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgca 93  Q
    |||| |||||||||| ||||| ||||||||||| ||||| || ||| ||||||| |||||||    
T  11811 gtcctctccgttagttttttaatgtctaatatttttgatgtgattttaaccattcgattgca 11872  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 8188211 - 8188125
Alignment:
Q  32 gtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtatgcaatggtgaacc 118  Q
    |||| |||||||||| ||||| ||||||| |||  ||||||| ||| |||||||||||||||  |||||| |||  |||||||||||    
T  8188211 gtcctctccgttagttttttaatgtctaaaatttctgatatgattttaaccatttgattgcatgtccattatatttaatggtgaacc 8188125  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 1273194 - 1273255
Alignment:
Q  32 gtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgca 93  Q
    |||| |||||||||| ||||| ||| ||||||| |||||||| ||||||||||| |||||||    
T  1273194 gtcccctccgttagttttttaatgtttaatatttttgatatgatttcaaccattcgattgca 1273255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 12829675 - 12829748
Alignment:
Q  32 gtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtat 105  Q
    |||| ||| |||||| ||||| | ||||||||| ||||| || |||||||  ||||||||||||||||| ||||    
T  12829675 gtcctctctgttagtattttaatatctaatatttttgatttgatttcaactgtttgattgcaaatccatcgtat 12829748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 12861654 - 12861727
Alignment:
Q  32 gtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtat 105  Q
    |||| ||| |||||| ||||| | ||||||||| ||||| || |||||||  ||||||||||||||||| ||||    
T  12861654 gtcctctctgttagtattttaatatctaatatttttgatttgatttcaactgtttgattgcaaatccatcgtat 12861727  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 7921649 - 7921595
Alignment:
Q  37 ctccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattg 91  Q
    |||||||||| ||||| ||||||||||| |||||||| ||||||||||| |||||    
T  7921649 ctccgttagttttttaatgtctaatatttttgatatgatttcaaccattcgattg 7921595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 31281077 - 31281163
Alignment:
Q  32 gtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtatgcaatggtgaacc 118  Q
    ||||||||||||||| ||||| ||||||||||  |  ||||| ||||| ||||| ||||||||  |||||||||| || ||||||||    
T  31281077 gtccactccgttagttttttaatgtctaatatcttaaatatgatttcagccattagattgcaagaccattgtatgtaacggtgaacc 31281163  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 55425613 - 55425527
Alignment:
Q  32 gtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtatgcaatggtgaacc 118  Q
    ||||||||||||||| ||||| ||||||||||  |  ||||| ||||| ||||| ||||||||  |||||||||| || ||||||||    
T  55425613 gtccactccgttagttttttaatgtctaatatcttaaatatgatttcagccattagattgcaagaccattgtatgtaacggtgaacc 55425527  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 32980458 - 32980377
Alignment:
Q  37 ctccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtatgcaatggtgaacc 118  Q
    |||||||||| ||||| | ||||| ||| |||||||| ||||||||||| |||||||  |||||| ||| |||| |||||||    
T  32980458 ctccgttagttttttaatttctaacatttttgatatgatttcaaccattcgattgcaggtccattatatacaatagtgaacc 32980377  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 8372622 - 8372566
Alignment:
Q  37 ctccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgca 93  Q
    |||||||||| ||||| ||| ||||||| |||||||| ||||||||||| |||||||    
T  8372622 ctccgttagttttttaatgtttaatatttttgatatgatttcaaccattcgattgca 8372566  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 45422166 - 45422115
Alignment:
Q  42 ttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgca 93  Q
    ||||| ||||| |||||||||||||||||||| | | |||||||||||||||    
T  45422166 ttagttttttaatgtctaatattcttgatatgatattaaccatttgattgca 45422115  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 17345415 - 17345476
Alignment:
Q  32 gtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgca 93  Q
    |||| |||||||||| ||||| ||||||||||| || ||||| ||| ||||||| |||||||    
T  17345415 gtcctctccgttagttttttaatgtctaatatttttaatatgatttgaaccattcgattgca 17345476  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 25609286 - 25609331
Alignment:
Q  187 aaaaattaaaaacttaaattatgtttttaaaaactcaatcttcatc 232  Q
    ||||||||||||||   |||||||||||||||| ||||||||||||    
T  25609286 aaaaattaaaaactcgtattatgtttttaaaaaatcaatcttcatc 25609331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 26797429 - 26797497
Alignment:
Q  37 ctccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtat 105  Q
    |||||||||| || || ||  ||||||| |||||||  |||||||||||||||||||  ||||||||||    
T  26797429 ctccgttagttttctaatgattaatatttttgatataatttcaaccatttgattgcaggtccattgtat 26797497  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 48253043 - 48253111
Alignment:
Q  37 ctccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtat 105  Q
    |||||||||| ||||| |||||||  || ||||| || ||| |||||||||||||||  ||||||||||    
T  48253043 ctccgttagttttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccattgtat 48253111  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 16362524 - 16362585
Alignment:
Q  32 gtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgca 93  Q
    |||| |||||||||| ||||| ||||||||||| |||||||| |||||||| || |||||||    
T  16362524 gtcctctccgttagttttttaatgtctaatatttttgatatgatttcaaccgttcgattgca 16362585  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 36940039 - 36939958
Alignment:
Q  37 ctccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtatgcaatggtgaacc 118  Q
    |||||||| | ||||| | ||||||| | |||||||||||||||||||| |||||||  ||||||||||  ||| |||||||    
T  36940039 ctccgttaattttttaatatctaataattttgatatggtttcaaccattcgattgcaggtccattgtatataatagtgaacc 36939958  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 22621145 - 22621059
Alignment:
Q  32 gtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtatgcaatggtgaacc 118  Q
    |||| ||| |||||| ||||| ||| ||| |||||||||||| ||| || ||||||||||||  ||||||||||  || ||||||||    
T  22621145 gtcctctctgttagttttttaatgtataaaattcttgatatgattttaatcatttgattgcatgtccattgtatttaacggtgaacc 22621059  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 37474031 - 37473974
Alignment:
Q  48 ttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtat 105  Q
    ||||| ||||||||||| ||||||| ||||  |||||| ||||||| |||||||||||    
T  37474031 ttttaatgtctaatatttttgatattgttttgaccattcgattgcagatccattgtat 37473974  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 38790259 - 38790191
Alignment:
Q  37 ctccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtat 105  Q
    |||||||| | ||||| ||||||||| | ||||||||  |||||||||  ||||||| |||||||||||    
T  38790259 ctccgttaattttttaatgtctaataatgttgatatgacttcaaccatccgattgcagatccattgtat 38790191  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 35483679 - 35483752
Alignment:
Q  32 gtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtat 105  Q
    |||| |||||||||| ||| | ||||||||||| ||||| || |||||||| ||||||||||| ||||| ||||    
T  35483679 gtcctctccgttagtatttaaatgtctaatatttttgatttgatttcaaccgtttgattgcaagtccatcgtat 35483752  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 40739064 - 40739119
Alignment:
Q  187 aaaaattaaaaacttaaattatgtttttaaaaactcaatcttcatcacttcttctc 242  Q
    ||||||| |||| | ||||||||||||||||||| ||||||||||  |||||||||    
T  40739064 aaaaatttaaaattcaaattatgtttttaaaaacccaatcttcatgtcttcttctc 40739119  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 17288248 - 17288167
Alignment:
Q  37 ctccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtatgcaatggtgaacc 118  Q
    |||||||||| ||||| |||||||  || |||||||| ||| ||| |||||||||||  ||||||||||  ||| |||||||    
T  17288248 ctccgttagttttttaatgtctaaattttttgatatgattttaactatttgattgcatgtccattgtatttaatagtgaacc 17288167  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 25532257 - 25532310
Alignment:
Q  40 cgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgca 93  Q
    ||||||| ||||| ||| ||||||| |||||||| ||||||||||| |||||||    
T  25532257 cgttagttttttaatgtttaatatttttgatatgatttcaaccattcgattgca 25532310  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 4830686 - 4830613
Alignment:
Q  32 gtccactccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtat 105  Q
    |||| |||||||||| ||| | ||||||||||| |||||||| ||||||||||| ||||| |  ||||||||||    
T  4830686 gtcctctccgttagtttttgaatgtctaatatttttgatatgatttcaaccattcgattgtaggtccattgtat 4830613  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 3533631 - 3533564
Alignment:
Q  38 tccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtat 105  Q
    ||||||||| ||||| ||| |||  || |||||||| |||||||| |||||||||| |||||||||||    
T  3533631 tccgttagtattttaatgtttaagttttttgatatgatttcaaccgtttgattgcagatccattgtat 3533564  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 7038345 - 7038278
Alignment:
Q  38 tccgttagtcttttagtgtctaatattcttgatatggtttcaaccatttgattgcaaatccattgtat 105  Q
    |||||| || ||||| ||| || |||| ||||||| |||||||||||| |||||||| ||||||||||    
T  7038345 tccgtttgttttttaatgtttactatttttgatattgtttcaaccattcgattgcaagtccattgtat 7038278  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 29466269 - 29466313
Alignment:
Q  187 aaaaattaaaaacttaaattatgtttttaaaaactcaatcttcat 231  Q
    ||||||| |||||| ||||||||||||||||||| ||||||||||    
T  29466269 aaaaatttaaaactcaaattatgtttttaaaaacccaatcttcat 29466313  T

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Target: scaffold1550 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1550
Description:

Target: scaffold1550; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 451 - 489
Alignment:
Q  187 aaaaattaaaaacttaaattatgtttttaaaaactcaat 225  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  451 aaaaatttaaaacttaaattatgcttttaaaaactcaat 489  T

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