View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18820_high_1 (Length: 516)
Name: NF18820_high_1
Description: NF18820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18820_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 8483076 - 8482621
Alignment:
| Q |
18 |
atatgtccatggtgtggcagatggagatgcattcagcgtctccaatcgatgtctacctggagctggaaagaataacttatccaattattatgttctaaaa |
117 |
Q |
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||||||||||||||||||||| |||||||||||| || |||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |
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| T |
8483076 |
atatgtccatggtgtggcagagagagatgcattcaccgactccaatcgatgtctacccggagctggaaagaataactcattcaattattatgttctaaaa |
8482977 |
T |
|
| Q |
118 |
tttgagggtttgattaacttattcaatttatgtgatttccaatatgtttccaatgttggattagattataagatgacaaagacagtgaaacattcccagc |
217 |
Q |
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| T |
8482976 |
tttgagggtacttataact----caatttatgtgatttccaatatgtttccaatgttggattagattctaagatgacaaagacagtgaaacattcccagc |
8482881 |
T |
|
| Q |
218 |
ctgtgggttt-gtaacacggcaggatcgatctttctcttcaaatgtttgtga---cggtttgacatagtaaccattcaagaggttgatcaaaacatcatc |
313 |
Q |
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|||||||||| |||| || ||||||| ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8482880 |
ctgtgggttttgtaataccgcaggattgatctttctcttcaaatgtgtgggagtacggtttgacatagtaaccattcaagaggttgatcaaaacatcatc |
8482781 |
T |
|
| Q |
314 |
atgagtacaaagtatttccaatgttccagatcgccaccactagtctggaaagat-agtgactttgttatgaacaacttttgggatgttcctaaatagaag |
412 |
Q |
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| T |
8482780 |
ataagtacaaagtatttccaatgttccagatcaccaccactagtctggaaagataagtgagtttgttatgaacaacttttgggatgttcctaaatagaag |
8482681 |
T |
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| Q |
413 |
agaaattatactaagatcagaataaaaactacactaagagtgtgtttggatagagaatttta |
474 |
Q |
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| T |
8482680 |
agaaattatactaagatcagaataaaaactcctcta--agtgtgtttggatagagaatttta |
8482621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 8355261 - 8355517
Alignment:
| Q |
18 |
atatgtccatggtgtggcagatggagatgcattcagcgtctccaatcgatgtctacctggagctggaaagaataacttatccaattattatgttctaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8355261 |
atatgtccatggtgtggcagatggagatgcattcagcgtctccaatcgatgtctacctggagctggaaagaataacttatccaattattatgttctaaaa |
8355360 |
T |
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| Q |
118 |
tttgagggttt-gattaacttattcaatttatgtgatttccaatatgtttccaatgttggattagattataagatgacaaagacagtgaaacattcccag |
216 |
Q |
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| T |
8355361 |
tttgagggtttcgattaacttattcaatttatgtgatttccaatatgtttccaatgttggattagattctaagatgacaaagacagtgaaacattcccag |
8355460 |
T |
|
| Q |
217 |
cctgtgggtttgtaacacggcaggatcgatctttctcttcaaatgtttgtgacggtt |
273 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||| || ||||||| |
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| T |
8355461 |
cctgtgggtttgtaacaccgcaggattgatctttctcttcaaatgtgtgggacggtt |
8355517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 335 - 511
Target Start/End: Original strand, 8355517 - 8355690
Alignment:
| Q |
335 |
tgttccagatcgccaccactagtctggaaagatagtgactttgttatgaacaacttttgggatgttcctaaatagaagagaaattatactaagatcagaa |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8355517 |
tgttccagatcgccaccactagtctggaaagatagtgagtttgttatgaacaacttttgggatgttcctaaatagaagagaaattatactaag---agaa |
8355613 |
T |
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| Q |
435 |
taaaaactacactaagagtgtgtttggatagagaattttaatcggggaattatactatgaattggtaatcgcctttg |
511 |
Q |
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| T |
8355614 |
taaaaactacactaaaagtgtgtttggatagagaattttaatcggggaattatactatgaattggtaatcgcctttg |
8355690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 8349213 - 8349464
Alignment:
| Q |
18 |
atatgtccatggtgtggcagatggagatgcattcagcgtctccaatcgatgtctacctggagctggaaagaataacttatccaattattatgttctaaaa |
117 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||| || ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| |
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| T |
8349213 |
atatatccatggtgtggcagatggaaatgcattcagcgactacaatcgatgtctacccaaagctggaaagaataactcatccaattattatgttataaaa |
8349312 |
T |
|
| Q |
118 |
tttgagggtttgattaacttat---tcaatttatgtgatttccaatatgtttccaatgttggattagattataagatgacaaagacagtgaaacattccc |
214 |
Q |
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||||||||| |||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8349313 |
tttgagggt-------acttatagctcaattcatgtgatttccaatatttttccaatgttggattagatactaagatgacaaagacagtgaaacattccc |
8349405 |
T |
|
| Q |
215 |
agcctgtgggtttgtaacacggcaggatcgatctttctcttcaaatgtttgtgacggtt |
273 |
Q |
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| T |
8349406 |
agcctgtgggtttgtaacaccgcaggattgatctttctcttcaaatgtgtgggacggtt |
8349464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 262
Target Start/End: Original strand, 8350325 - 8350564
Alignment:
| Q |
21 |
tgtccatggtgtggcagatggagatgcattcagcgtctccaatcgatgtctacctggagctggaaagaataac-----ttatccaattattatgttctaa |
115 |
Q |
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|||||||||| |||||||||||| | ||||| || |||||||||||||| | |||||||||||||||||||| | ||||| |||| |||||||| |
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| T |
8350325 |
tgtccatggtttggcagatggagctttattcatcgactccaatcgatgtccagctggagctggaaagaataactcaattcatccacttatcgtgttctaa |
8350424 |
T |
|
| Q |
116 |
aatttgagggtttgattaacttattcaatttatgtgatttccaatatgtttccaatgttggat--tagattataagatgacaaagacagtgaaacattcc |
213 |
Q |
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||||||| ||| | ||||||||| ||||||||| | ||| ||||||||||| ||| |||||| || |||||||||| ||||||||||| |
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| T |
8350425 |
aatttgaaggt--------catattcaattgctgtgatttctagtatttttccaatgttagattatagattctaggatgacaaaggaagtgaaacattta |
8350516 |
T |
|
| Q |
214 |
cagcctgtgggtttgtaacacggcaggatcgatctttctcttcaaatgt |
262 |
Q |
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| T |
8350517 |
cggcctgt-ggtttatgacacaacatgattgatatttctcttcaaatgt |
8350564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 8480788 - 8480715
Alignment:
| Q |
21 |
tgtccatggtgtggcagatggagatgcattcagcgtctccaatcgatgtctacctggagctggaaagaataact |
94 |
Q |
| |
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|||| |||||||||||||||||| | |||| || | |||||||| ||||||| ||||||||||||||||||||| |
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| T |
8480788 |
tgtcaatggtgtggcagatggagcttcattaagagactccaatctatgtctagctggagctggaaagaataact |
8480715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 445
Target Start/End: Original strand, 37485994 - 37486059
Alignment:
| Q |
377 |
gttatgaacaacttttgggatgttcctaaatagaagagaaattatactaagatcagaataaaaactaca |
445 |
Q |
| |
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| T |
37485994 |
gttatgaacaacttttgggttgttcataaatggaagagaaactatgctaag---agaataaaaactaca |
37486059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 8432701 - 8432760
Alignment:
| Q |
148 |
tgtgatttccaatatgtttccaatgttggattagattataagatgacaaagacagtgaaa |
207 |
Q |
| |
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||||||||||||||||||| |||||| |||| |||||| |||||||||| |||||||| |
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| T |
8432701 |
tgtgatttccaatatgtttttaatgttagattcaattataggatgacaaaggcagtgaaa |
8432760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 1169593 - 1169539
Alignment:
| Q |
18 |
atatgtccatggtgtggcagatggagatgcattcagcgtctccaatcgatgtcta |
72 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
1169593 |
atatgtccagggtgtggcagatggagatgcattcagccgctccaatcgatctcta |
1169539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 422
Target Start/End: Complemental strand, 36866344 - 36866296
Alignment:
| Q |
374 |
tttgttatgaacaacttttgggatgttcctaaatagaagagaaattata |
422 |
Q |
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||||||||||||||||||| || ||||| ||||| ||||||||||||| |
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| T |
36866344 |
tttgttatgaacaactttttggttgttcataaatgaaagagaaattata |
36866296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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