View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18820_high_2 (Length: 296)
Name: NF18820_high_2
Description: NF18820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18820_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 22620922 - 22621008
Alignment:
| Q |
74 |
ggactatgaccatagctggagtaatgtagcaaaagtgctccaacattctcccaagcttcaaattcttttaatttgaaaggttcacac |
160 |
Q |
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| T |
22620922 |
ggactatgaccatagctggaataatgtagcaaaagtgctccaacattctcccaagcttcaaattcttttaattagaaaggttcacac |
22621008 |
T |
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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 22621388 - 22621451
Alignment:
| Q |
226 |
gacttcctttgacagaatagcagcaactattacac--atagaaaagattggaaaaacccaaatt |
287 |
Q |
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| T |
22621388 |
gacttcctttgacagagaagcagcaactattacacatatagaaaagattgggaaagcccaaatt |
22621451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 31270912 - 31270955
Alignment:
| Q |
97 |
atgtagcaaaagtgctccaacattctcccaagcttcaaattctt |
140 |
Q |
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| T |
31270912 |
atgtagcagaattgctccaacattctcccaagtttcaaattctt |
31270955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 15148375 - 15148292
Alignment:
| Q |
74 |
ggactatgaccatagctggagtaatgtagcaaaagtgctccaacattctcccaagcttcaaattcttttaatttgaaaggttca |
157 |
Q |
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| T |
15148375 |
ggactatgaccatagctgaagtaatgtagcaaaagtgctccaacattctcccaaggttcaaattcttttaattagaaagattca |
15148292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 15147693 - 15147622
Alignment:
| Q |
226 |
gacttcctttgacagaatagcagcaactattacacata--gaaaagattggaaaaacccaaatttggttcct |
295 |
Q |
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| T |
15147693 |
gacttccttcgccagagaagcagcaactattacacatatagaaaagattgggaaaacccaaatttggttcct |
15147622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 15148961 - 15148928
Alignment:
| Q |
12 |
tttcaatgtccatgaatggatcgaagctgcaaaa |
45 |
Q |
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| T |
15148961 |
tttcaatgtccacgaatggatcgaagctgcaaaa |
15148928 |
T |
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