View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18821_low_1 (Length: 716)
Name: NF18821_low_1
Description: NF18821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18821_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 562; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 15 - 697
Target Start/End: Original strand, 18276393 - 18277076
Alignment:
| Q |
15 |
cacagattgtcaacaatgtcttgaaaaacaattcctttctgcccacccctttttcatcttatgggtaagagagaattgtacggatccattattcagtaaa |
114 |
Q |
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| T |
18276393 |
cacagattgtcaacaatgtcttgaaaaacaattcctttctgcccacccctttttcatcttatgggtgagagagaattgtagggatccattattcagtaaa |
18276492 |
T |
|
| Q |
115 |
cgtcgcagattcatggttattcagcccttactctaataaaacatatcggctatgcacaaaaatttattaaccttcactataatctagcactacaaaacaa |
214 |
Q |
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| T |
18276493 |
cgtcgcagatttatggttattcagcccttactctaataaaacatatccgctatgcacaaaaatttattaaccttcactataatctagcactacgaaacaa |
18276592 |
T |
|
| Q |
215 |
cgatgacaataatcttttatctcttaactaacaaaaacaacaactactattacctttgtcctacctcgagtcccttcaaccgcaattcgagcaacctaat |
314 |
Q |
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| T |
18276593 |
cgatgacaataatcttttatctcttaactaacaaaaacaacaactactactacctttgtcctacctcgagtcccttcaaccgcaattcgagcaacctaat |
18276692 |
T |
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| Q |
315 |
caaatccccatcattaatctgcaaaggaagagaaaaaccaaacagagtgtaccatagtc-----ccacgtaccaaagtgaattgcgaaccaggtagctat |
409 |
Q |
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| T |
18276693 |
caaatccccatcactaatctgcaaaggaagagaaaaac----cagagtgtcccacagtcccgtaccatgtaccaaagtgaattgcgaaccaggtagctat |
18276788 |
T |
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| Q |
410 |
gatttagccctatctctaacacaagttatcagctatgcacaaacatttgttatattctagcaatgcagtgacagttatatttctatcttgtctattnnnn |
509 |
Q |
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| T |
18276789 |
gatttagccctatctctaacacaagttatcagctatgcacaaacatttgttctattctagcaacgcagtgacagttatatttctctcttgtctattaaaa |
18276888 |
T |
|
| Q |
510 |
nnnccctccatcactaacccgcaacatctcttgcaaaggatgcgacaattatattttctctcttaactaaccaaaacaactacttcaactaattgtgtca |
609 |
Q |
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| T |
18276889 |
aaaccctccatcactaacccgcaacatctcttgcaaaggatgcgacaattatattttctctcttaactaaccaaaacaactacttcaactaattgtgtca |
18276988 |
T |
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| Q |
610 |
atagcatataactgaaaatagcggatcattcaaattccgctatgctatattgctatagcgctgctattttaaaccactttgtattaaa |
697 |
Q |
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| T |
18276989 |
atagcatataactgaaaatagcggatcattcaaattccgctacactatattgctatagcgctgctattttaaattactttgtattaaa |
18277076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 558
Target Start/End: Original strand, 18277209 - 18277250
Alignment:
| Q |
517 |
ccatcactaacccgcaacatctcttgcaaaggatgcgacaat |
558 |
Q |
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| T |
18277209 |
ccatcactaacctgcaacatctcttgcaaagaaagcgacaat |
18277250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 670
Target Start/End: Original strand, 47220076 - 47220121
Alignment:
| Q |
625 |
aaatagcggatcattcaaattccgctatgctatattgctatagcgc |
670 |
Q |
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| T |
47220076 |
aaatagcggatcattaaaattccgctatgcaatggtgctatagcgc |
47220121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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