View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18821_low_2 (Length: 460)

Name: NF18821_low_2
Description: NF18821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18821_low_2
NF18821_low_2
[»] chr8 (9 HSPs)
chr8 (4-411)||(23745876-23746289)
chr8 (251-433)||(21208566-21208748)
chr8 (251-419)||(14887299-14887467)
chr8 (322-417)||(22835371-22835466)
chr8 (338-433)||(18236943-18237038)
chr8 (338-433)||(18246394-18246489)
chr8 (333-433)||(20748621-20748721)
chr8 (338-433)||(33597564-33597659)
chr8 (344-433)||(12919836-12919925)
[»] scaffold0163 (1 HSPs)
scaffold0163 (4-433)||(19803-20229)
[»] chr3 (8 HSPs)
chr3 (16-433)||(40089318-40089732)
chr3 (16-433)||(2159165-2159579)
chr3 (251-433)||(6426870-6427052)
chr3 (251-433)||(8977409-8977591)
chr3 (251-406)||(16406172-16406327)
chr3 (251-433)||(9541699-9541881)
chr3 (333-419)||(28360381-28360467)
chr3 (336-376)||(25507093-25507133)
[»] scaffold0066 (1 HSPs)
scaffold0066 (11-380)||(1799-2175)
[»] chr1 (1 HSPs)
chr1 (4-433)||(20175248-20175674)
[»] chr5 (12 HSPs)
chr5 (261-451)||(21081392-21081582)
chr5 (4-158)||(21081583-21081737)
chr5 (251-433)||(27416694-27416876)
chr5 (227-433)||(20952400-20952606)
chr5 (251-433)||(18384303-18384485)
chr5 (251-433)||(26197921-26198103)
chr5 (322-433)||(33943954-33944065)
chr5 (251-419)||(19381388-19381556)
chr5 (333-433)||(30450278-30450378)
chr5 (338-433)||(24296248-24296343)
chr5 (333-433)||(24416830-24416930)
chr5 (371-419)||(26040415-26040463)
[»] scaffold0145 (1 HSPs)
scaffold0145 (251-433)||(33497-33679)
[»] chr6 (6 HSPs)
chr6 (251-433)||(24927761-24927943)
chr6 (251-433)||(16902509-16902691)
chr6 (251-433)||(31361382-31361564)
chr6 (251-406)||(18164628-18164783)
chr6 (320-433)||(27746664-27746777)
chr6 (320-376)||(11378009-11378065)
[»] chr4 (5 HSPs)
chr4 (251-419)||(16269619-16269787)
chr4 (251-433)||(6696781-6696963)
chr4 (251-419)||(17155979-17156147)
chr4 (333-433)||(26816491-26816591)
chr4 (333-433)||(54695462-54695562)
[»] chr2 (8 HSPs)
chr2 (227-433)||(27165576-27165782)
chr2 (322-419)||(45018984-45019081)
chr2 (251-433)||(9509360-9509542)
chr2 (251-433)||(18655781-18655963)
chr2 (332-419)||(22103158-22103245)
chr2 (341-376)||(29847521-29847556)
chr2 (341-400)||(29862811-29862870)
chr2 (330-399)||(22906787-22906856)
[»] scaffold0313 (2 HSPs)
scaffold0313 (250-419)||(14119-14288)
scaffold0313 (328-419)||(40-131)
[»] scaffold0611 (1 HSPs)
scaffold0611 (251-419)||(2509-2677)
[»] chr7 (11 HSPs)
chr7 (251-433)||(16137780-16137962)
chr7 (251-433)||(6539040-6539222)
chr7 (251-433)||(26353895-26354077)
chr7 (251-433)||(32102943-32103125)
chr7 (251-433)||(46501677-46501859)
chr7 (251-419)||(9540850-9541018)
chr7 (275-433)||(5387511-5387669)
chr7 (251-433)||(8505612-8505794)
chr7 (251-433)||(44901920-44902102)
chr7 (322-419)||(18663519-18663616)
chr7 (333-433)||(15179736-15179836)
[»] scaffold0254 (1 HSPs)
scaffold0254 (251-433)||(13574-13756)
[»] scaffold0141 (1 HSPs)
scaffold0141 (328-419)||(30523-30614)
[»] scaffold0049 (2 HSPs)
scaffold0049 (328-419)||(84198-84289)
scaffold0049 (320-376)||(19201-19257)
[»] scaffold0059 (1 HSPs)
scaffold0059 (329-433)||(46020-46124)
[»] scaffold0764 (1 HSPs)
scaffold0764 (328-419)||(6489-6580)
[»] scaffold0572 (1 HSPs)
scaffold0572 (328-433)||(19-124)
[»] scaffold0142 (1 HSPs)
scaffold0142 (322-419)||(32516-32613)
[»] scaffold0003 (1 HSPs)
scaffold0003 (251-399)||(153135-153283)
[»] scaffold0028 (1 HSPs)
scaffold0028 (333-433)||(99976-100076)
[»] scaffold0010 (2 HSPs)
scaffold0010 (338-433)||(261085-261180)
scaffold0010 (338-433)||(263388-263483)
[»] scaffold0233 (1 HSPs)
scaffold0233 (333-433)||(6894-6994)
[»] scaffold0021 (1 HSPs)
scaffold0021 (320-376)||(167490-167546)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 4 - 411
Target Start/End: Complemental strand, 23746289 - 23745876
Alignment:
Q  4 agatggacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatcca--cgtccaagc 101  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||  |||||||||    
T  23746289 agatgaacatcattattctagtcatcaacaaacttctgatatatcaaaacaaaaggatgaagacgaaccaaattcatcttctctatccattcgtccaagc 23746190  T
Q  102 tggaaatcagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccaagnnnnnnnn----tggcta 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||  |||             ||| ||    
T  23746189 tggaaatcagttgttgatcatcctaaagagttaatcatttgtgactctgctgataaagtaagaacaagatcatcataacaacacaaatcaaacatggtta 23746090  T
Q  198 tgattttccaaatggagccaaaatccttaaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaa 297  Q
    ||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||||||||| |||||| |||||    
T  23746089 tgatttctcaaatagagccaaaatccataaatgaagttatcactaatcaatcatggattgaagccatgacttaagagctttctcaatttgagagaaacaa 23745990  T
Q  298 agtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaac 397  Q
    ||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  23745989 agtctggaattcggtacctgaacctcaagacgaaaccatcattggaacaagatgggtgttcagagatatactagatgaaaatggtaaggttgtcagaaac 23745890  T
Q  398 aaggcaagattagt 411  Q
    |||| |||||||||    
T  23745889 aaggaaagattagt 23745876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 433
Target Start/End: Complemental strand, 21208748 - 21208566
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  21208748 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 21208649  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  21208648 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 21208566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 419
Target Start/End: Complemental strand, 14887467 - 14887299
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||||| |||||||  || || |||||||| | ||| || |||||||| ||||| || || ||| |   ||||||||||| |||||||||||||||||    
T  14887467 tggattgaggccatgaaggaggaactttctcagtttgaaagaaacaaagtttggaacttagttccaaataatcaagacaaaagcatcattggaacaagat 14887368  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    ||||||| ||||| || || ||| ||   |||||||||||||||||||| ||||| |||||||||||||    
T  14887367 gggtgtttagaaacaagcttgataaaggaggtaaggttgtcagaaacaaagcaaggttagttgctcaag 14887299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 322 - 417
Target Start/End: Original strand, 22835371 - 22835466
Alignment:
Q  322 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctca 417  Q
    ||||| ||||||||||||||| ||||||| ||| ||||||||||| || |||||| | |||||||||||||||||||| ||||| |||||||||||    
T  22835371 tcaaggcaaaaccatcattggtacaagataggttttcagaaataagcttgatgaagaaggtaaggttgtcagaaacaatgcaaggttagttgctca 22835466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 433
Target Start/End: Original strand, 18236943 - 18237038
Alignment:
Q  338 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| || || ||||||||||| ||||  || |||||||||    
T  18236943 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaagccagattagttgcacaaggctacaatcaacaa 18237038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 433
Target Start/End: Original strand, 18246394 - 18246489
Alignment:
Q  338 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| || || ||||||||||| ||||  || |||||||||    
T  18246394 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaagccagattagttgcacaaggctacaatcaacaa 18246489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 433
Target Start/End: Original strand, 20748621 - 20748721
Alignment:
Q  333 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 432  Q
    ||||||||||||||||||| || || |||||||||||| ||||| | || || ||| | |||||||| || ||||| || |||||||  || ||||||||    
T  20748621 ccatcattggaacaagatgagtatttagaaataaactaaatgaagaaggaaaagttataagaaacaaagctagattggtagctcaagggtacaatcaaca 20748720  T
Q  433 a 433  Q
    |    
T  20748721 a 20748721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 433
Target Start/End: Complemental strand, 33597659 - 33597564
Alignment:
Q  338 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||||||| |||||||| |||||||| ||| |||||||| | || || ||| ||||||| || || |||||||| || ||||  ||||||||||||    
T  33597659 attggaaccagatgggttttcagaaacaaattagatgaagaaggaaaagttatcagaaataaagcgagattagtcgcacaagggtataatcaacaa 33597564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 433
Target Start/End: Original strand, 12919836 - 12919925
Alignment:
Q  344 acaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    ||||| ||||| |||||||| ||| |||||||| | || || ||||||||||| || || |||||||| || ||||  ||||||||||||    
T  12919836 acaaggtgggtcttcagaaacaaattagatgaagaaggaaaagttgtcagaaataaagctagattagtagcacaaggctataatcaacaa 12919925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 4 - 433
Target Start/End: Original strand, 19803 - 20229
Alignment:
Q  4 agatggacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctg 103  Q
    ||||| || |||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||    ||  |||   |||||||||    
T  19803 agatgaacctcatcattctagtcatcaacaaacctctgatatatcaaaacaaaaggatgaagatgaaccagattcat----tcattcc---tccaagctg 19895  T
Q  104 gaaatcagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccaagnnnnnnnn----tggctatg 199  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||            ||||||||    
T  19896 gaaatcagttgttgatcatccaaaagaattaatcattggtgacactgctgataaagtaagaacaagatcatcattccaagacaaaacaaacatggctatg 19995  T
Q  200 attttccaaatggagccaaaatccttaaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaag 299  Q
    ||||  |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | ||| || |||||||    
T  19996 atttctcaaatggagccaaaatccataaatgaagctatcattgatcaatcatggattgaagccatgactgaagagctttctcagtttgaaagaaacaaag 20095  T
Q  300 tctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaa 399  Q
    |||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||    
T  20096 tctggaatttagtacctgaacctcgagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaagatggtaaagtggtcagaaacaa 20195  T
Q  400 ggcaagattagttgctcaagattataatcaacaa 433  Q
     |||||| |||||||||||| |||||||||||||    
T  20196 agcaagactagttgctcaaggttataatcaacaa 20229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 40089732 - 40089318
Alignment:
Q  16 tcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctggaaatcagttgt 115  Q
    ||||||||| ||||||||||| |||||| |||||||||| |||  |||||| |||||| ||||||    ||  |||   ||||| |||||||||||||||    
T  40089732 tcattctagacatcaacaaacctctgatgtatcaaaacagaagaatgaagatgaaccaaattcat----tcattcc---tccaaactggaaatcagttgt 40089640  T
Q  116 tgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccaagnnnnnnnn----tggctatgattttccaaatg 211  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||            ||||||||||||  ||||||    
T  40089639 tgatcatcctaaagaattaatcattggtgacactgctgataaagtaagaacaagatcatcattccaagacaaaacaaacatggctatgatttctcaaatg 40089540  T
Q  212 gagccaaaatccttaaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttgg 311  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| ||| || ||||||||||||||||| |    
T  40089539 gagccaaaatccataaatgaagctatcattgatcaatcatggattgaagccatgactgaagaactttctcaatttgaaagaaacaaagtctggaatttag 40089440  T
Q  312 taccagaacctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagt 411  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||| |||||| ||||    
T  40089439 tacctgaacctcaagacaaaactatcattggaacaagatgggtgttcagaaataaactagatgaagatggtaaagtggtaagaaacaaagcaagactagt 40089340  T
Q  412 tgctcaagattataatcaacaa 433  Q
     ||||||| |||||||||||||    
T  40089339 agctcaaggttataatcaacaa 40089318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 2159165 - 2159579
Alignment:
Q  16 tcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctggaaatcagttgt 115  Q
    ||||||||| ||||||||||| |||||| |||||||||| |||  |||||| ||||||  |||||    ||  |||   |||||||||||||||||||||    
T  2159165 tcattctagacatcaacaaacctctgatgtatcaaaacagaagaatgaagatgaaccaagttcat----tcattcc---tccaagctggaaatcagttgt 2159257  T
Q  116 tgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccaagnnnnnnnn----tggctatgattttccaaatg 211  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||            |||||||||| |  ||||||    
T  2159258 tgatcatcctaaagaattaatcattggtgacactgctgataaagtaagaacaagatcatcattccaagacaaaacaaacatggctatgatctctcaaatg 2159357  T
Q  212 gagccaaaatccttaaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttgg 311  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||| ||| || ||||||||||||||||| |    
T  2159358 gagccaaaatccataaatgaagctatcattgatcaatcatggattgaagccatgaatgaagaactttctcaatttgaaagaaacaaagtctggaatttag 2159457  T
Q  312 taccagaacctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagt 411  Q
    |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||  ||||    
T  2159458 tacctgaaccacgagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaagatggtaaagttgtcagaaacaaagcaaggctagt 2159557  T
Q  412 tgctcaagattataatcaacaa 433  Q
    |||||||| |||||||||||||    
T  2159558 tgctcaaggttataatcaacaa 2159579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 433
Target Start/End: Original strand, 6426870 - 6427052
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  6426870 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 6426969  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| |||||||| || || |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  6426970 gggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 6427052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 433
Target Start/End: Original strand, 8977409 - 8977591
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  8977409 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 8977508  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  8977509 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 8977591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 251 - 406
Target Start/End: Original strand, 16406172 - 16406327
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  16406172 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 16406271  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaaga 406  Q
    |||| |||||||| || || |||||| | ||||| |||||||||||||| ||||||    
T  16406272 gggttttcagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaga 16406327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 251 - 433
Target Start/End: Original strand, 9541699 - 9541881
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  9541699 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 9541798  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||| | ||||||||||||| ||| || ||||||    
T  9541799 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcacggttagttgctcaaggttacaaccaacaa 9541881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 419
Target Start/End: Complemental strand, 28360467 - 28360381
Alignment:
Q  333 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    ||||||||||||||||||| || || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||    
T  28360467 ccatcattggaacaagatgtgtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaag 28360381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 25507133 - 25507093
Alignment:
Q  336 tcattggaacaagatgggtgttcagaaataaactagatgaa 376  Q
    ||||||||||||||||||| || ||||| ||||||||||||    
T  25507133 tcattggaacaagatgggtttttagaaacaaactagatgaa 25507093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 2175 - 1799
Alignment:
Q  11 catcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatcca--cgtccaagctggaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||  | ||||||||||||||    
T  2175 catcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggatgaagacgaaccaaattcatcttctctatccattcctccaagctggaaat 2076  T
Q  109 cagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccaag----nnnnnnnntggctatgatttt 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||  ||||            ||||| ||||||     
T  2075 cagttgttgatcatcctaaagagttaatcattggtgacactgctgataaagtaagaacaagatcatcataacaagacaaatcaaatatggctttgatttc 1976  T
Q  205 ccaaatggagccaaaatccttaaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctgg 304  Q
     ||||| |||||||||||| ||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| |||    
T  1975 tcaaatagagccaaaatccataaatgaagttatcattaatcaatcatggattgaagccatgactgaagagctttctcaatttgagagaaacaaagtatgg 1876  T
Q  305 aatttggtaccagaacctcaagacaaaaccatcattggaacaagatgggtgt-tcagaaataaactagatgaaaatg 380  Q
    |||||||||||  ||| ||||||| |||||||||||||||||| ||| |||| ||||||||| ||| ||||||||||    
T  1875 aatttggtacctaaacatcaagacgaaaccatcattggaacaaaatgcgtgtgtcagaaatatactggatgaaaatg 1799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 433
Target Start/End: Original strand, 20175248 - 20175674
Alignment:
Q  4 agatggacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctg 103  Q
    ||||| || |||||||||||| ||||||||||| ||||||||||||||||||||   |||||| ||| || ||||||     |  |||   |||||||||    
T  20175248 agatgaacctcatcattctagacatcaacaaacatctgatatatcaaaacaaaaaaatgaagatgaaacaaattcata----cattcc---tccaagctg 20175340  T
Q  104 gaaatcagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccaagnnnnnnnn----tggctatg 199  Q
    ||||||||||||||||||||| ||| | ||||||||| ||||||||||||| ||||||||||||||||||||||||||||            ||||||||    
T  20175341 gaaatcagttgttgatcatccaaaaaaattaatcattggtgacactgctgataaagtaagaacaagatcatcattccaagacaaaacaaacatggctatg 20175440  T
Q  200 attttccaaatggagccaaaatccttaaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaag 299  Q
    || |  |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||| ||| || |||||||    
T  20175441 atatctcaaatggagccaaaatccataaatgaagctatcattgatcaatcatggattgaagccatgaatgaagaactttctcaatttgaaagaaacaaag 20175540  T
Q  300 tctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaa 399  Q
    |||||||||| |||||  |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  20175541 tctggaatttagtacctaaaccacgagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaagatggtaaagttgtcagaaacaa 20175640  T
Q  400 ggcaagattagttgctcaagattataatcaacaa 433  Q
     |||||  |||||||||||| |||||||||||||    
T  20175641 agcaaggctagttgctcaaggttataatcaacaa 20175674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 261 - 451
Target Start/End: Complemental strand, 21081582 - 21081392
Alignment:
Q  261 ccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagatgggtgttcag 360  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  21081582 ccatgactgaatagctttctcaatttgagaggaacaaagtctggaatttggtatctgaacctcaagacaaaaccatcattggaacaagatgggtgttcag 21081483  T
Q  361 aaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaaaaagtctattttgatgat 451  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  21081482 aaataaactggatgaaaatggtaaggttgtcagaaacaagccaagattagttgctcaaggttataatcaacaagaagtctattttgatgat 21081392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 21081737 - 21081583
Alignment:
Q  4 agatggacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctg 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21081737 agatgaacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaatgttgaagacgaaccagattcatcttctctatccacgtccaagctg 21081638  T
Q  104 gaaatcagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaa 158  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21081637 gaaattagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaa 21081583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 433
Target Start/End: Original strand, 27416694 - 27416876
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||| ||    
T  27416694 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaacat 27416793  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| |||||||| ||||| |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  27416794 gggttttcagaaacaaacttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 27416876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 227 - 433
Target Start/End: Original strand, 20952400 - 20952606
Alignment:
Q  227 aatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaag 326  Q
    |||||||| |||| |||| | | |||||||||||||||||  ||||| |||||||| | ||| || || ||||| |||||||| || ||| |   ||||     
T  20952400 aatgaagccatcattgatgactcatggattgaagccatgaaggaagaactttctcagtttgaaagaaataaagtttggaatttagttccaaataatcaaa 20952499  T
Q  327 acaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataa 426  Q
     ||||||||||||||||||||||||||| ||||| || || || |||||| | |||||||||||||||||||| |||||  |||| ||||||| ||| ||    
T  20952500 gcaaaaccatcattggaacaagatgggttttcaggaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaaggttacaa 20952599  T
Q  427 tcaacaa 433  Q
    |||||||    
T  20952600 tcaacaa 20952606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 433
Target Start/End: Original strand, 18384303 - 18384485
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  18384303 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 18384402  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  18384403 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 18384485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 433
Target Start/End: Complemental strand, 26198103 - 26197921
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  26198103 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 26198004  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  26198003 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 26197921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 322 - 433
Target Start/End: Original strand, 33943954 - 33944065
Alignment:
Q  322 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagat 421  Q
    |||||| |||||||||||||||||||||||||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| |    
T  33943954 tcaagataaaaccatcattggaacaagatgggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggt 33944053  T
Q  422 tataatcaacaa 433  Q
    || || ||||||    
T  33944054 tacaaccaacaa 33944065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 251 - 419
Target Start/End: Complemental strand, 19381556 - 19381388
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||||| |||||||  ||| | |||||||| | ||| || |||||||| ||||| || || ||| |   ||||| ||||||||||||||| |||||||    
T  19381556 tggattgaggccatgaaagaataactttctcagtttgaaagaaacaaagtttggaacttagttccaaatgatcaaggcaaaaccatcattggtacaagat 19381457  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
     ||| |||||||| || || |||||| | ||||||||||| |||||||| ||||| |||||||||||||    
T  19381456 aggttttcagaaacaagcttgatgaagaaggtaaggttgttagaaacaaagcaaggttagttgctcaag 19381388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 433
Target Start/End: Complemental strand, 30450378 - 30450278
Alignment:
Q  333 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 432  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  30450378 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 30450279  T
Q  433 a 433  Q
    |    
T  30450278 a 30450278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 433
Target Start/End: Complemental strand, 24296343 - 24296248
Alignment:
Q  338 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| || || ||||||||||| ||||  || |||||||||    
T  24296343 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaagccagattagttgcacaaggctacaatcaacaa 24296248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 433
Target Start/End: Original strand, 24416830 - 24416930
Alignment:
Q  333 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 432  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||  |||||||||| || ||||| || |||||||  || ||||||||    
T  24416830 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagtcatcagaaacaaagctagattggtagctcaagggtacaatcaaca 24416929  T
Q  433 a 433  Q
    |    
T  24416930 a 24416930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 26040463 - 26040415
Alignment:
Q  371 gatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    |||||||||||||| ||   ||||||||||||||||||||| |||||||    
T  26040463 gatgaaaatggtaatgtaaccagaaacaaggcaagattagtagctcaag 26040415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 433
Target Start/End: Complemental strand, 33679 - 33497
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| || || ||| ||  |||||||||||||||||||||||||||||    
T  33679 tggattgaggccatgaaagaagaactttctcagtttgaaagaaacaaagtttggaacttagttccaaaaaatcaagacaaaaccatcattggaacaagat 33580  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| |||||||| || || |||||| |  ||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  33579 gggttttcagaaacaagcttgatgaagaacgtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 33497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 433
Target Start/End: Complemental strand, 24927943 - 24927761
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  24927943 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 24927844  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| |||||||| || || |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  24927843 gggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 24927761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 251 - 433
Target Start/End: Original strand, 16902509 - 16902691
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  16902509 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 16902608  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  16902609 gggtttttagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 16902691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 433
Target Start/End: Original strand, 31361382 - 31361564
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  31361382 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 31361481  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  31361482 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 31361564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 406
Target Start/End: Original strand, 18164628 - 18164783
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  18164628 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 18164727  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaaga 406  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||||    
T  18164728 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaga 18164783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 433
Target Start/End: Complemental strand, 27746777 - 27746664
Alignment:
Q  320 cctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    ||||||||| |||| || ||||||||||||||||| || ||||| |||||||||||| | || ||  || |  ||||||| || |||||||| || ||||    
T  27746777 cctcaagaccaaacaattattggaacaagatgggtttttagaaacaaactagatgaagaaggcaaaattattcgaaacaaagccagattagtggcacaag 27746678  T
Q  420 attataatcaacaa 433  Q
      ||||||||||||    
T  27746677 gatataatcaacaa 27746664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 11378009 - 11378065
Alignment:
Q  320 cctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaa 376  Q
    ||||||||  |||| |||||||||||||||||||| || ||||| |||||| |||||    
T  11378009 cctcaagatcaaacaatcattggaacaagatgggtttttagaaacaaactaaatgaa 11378065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 251 - 419
Target Start/End: Original strand, 16269619 - 16269787
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| || || ||| ||  |||||||||||||||||||||||||||||    
T  16269619 tggattgaggccatgaaagaagaactttctcagtttgaaagaaacaaagtttggaacttagttccaaaaaatcaagacaaaaccatcattggaacaagat 16269718  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    |||| |||||||| || || |||||| |  ||||||||||||||||||| ||||| |||||||||||||    
T  16269719 gggttttcagaaacaagcttgatgaagaacgtaaggttgtcagaaacaaagcaaggttagttgctcaag 16269787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 433
Target Start/End: Original strand, 6696781 - 6696963
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  6696781 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 6696880  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  6696881 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 6696963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 419
Target Start/End: Original strand, 17155979 - 17156147
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| || || ||| |   ||||| ||||||||||||||| |||||||    
T  17155979 tggattgaggccatgaaagaagaactttctcagtttgaaagaaacaaagtttggaacttagttccaaatgatcaaggcaaaaccatcattggtacaagat 17156078  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    | || |||| ||| || || |||||| | |||||||||||||||||||| ||||| |||||||||||||    
T  17156079 gagttttcataaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaag 17156147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 433
Target Start/End: Original strand, 26816491 - 26816591
Alignment:
Q  333 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 432  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  26816491 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 26816590  T
Q  433 a 433  Q
    |    
T  26816591 a 26816591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 433
Target Start/End: Complemental strand, 54695562 - 54695462
Alignment:
Q  333 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 432  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  54695562 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 54695463  T
Q  433 a 433  Q
    |    
T  54695462 a 54695462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 227 - 433
Target Start/End: Complemental strand, 27165782 - 27165576
Alignment:
Q  227 aatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaag 326  Q
    |||||||| |||| |||| | | |||||||||||||||||  ||||| |||||||| | ||| || |||||||| |||||||| || ||| |   ||||     
T  27165782 aatgaagccatcattgatgactcatggattgaagccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaatttagttccaaataatcaaa 27165683  T
Q  327 acaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataa 426  Q
     ||||||||||||||||||||||||||| ||||| || || || |||||| | |||||||||||||||||||| |||||  |||| ||||||| ||| ||    
T  27165682 gcaaaaccatcattggaacaagatgggttttcaggaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaaggttacaa 27165583  T
Q  427 tcaacaa 433  Q
    |||||||    
T  27165582 tcaacaa 27165576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 45018984 - 45019081
Alignment:
Q  322 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| | |||||||||||||||||||| ||||| |||||||||||||    
T  45018984 tcaagacaaaaccatcattggaacaagatgggttttcagaaacaaacttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaag 45019081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 433
Target Start/End: Complemental strand, 9509542 - 9509360
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  9509542 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 9509443  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  9509442 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 9509360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 251 - 433
Target Start/End: Original strand, 18655781 - 18655963
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||| ||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  18655781 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacagagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 18655880  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  18655881 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 18655963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 419
Target Start/End: Original strand, 22103158 - 22103245
Alignment:
Q  332 accatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    |||||||||||||||||||||||||| |||||||| || |||||| |||  || ||||  ||||||||||||||||| ||||||||||    
T  22103158 accatcattggaacaagatgggtgtttagaaataagcttgatgaagatgacaaagttgctagaaacaaggcaagattggttgctcaag 22103245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 376
Target Start/End: Complemental strand, 29847556 - 29847521
Alignment:
Q  341 ggaacaagatgggtgttcagaaataaactagatgaa 376  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29847556 ggaacaagatgggtgttcaaaaataaactagatgaa 29847521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 400
Target Start/End: Complemental strand, 29862870 - 29862811
Alignment:
Q  341 ggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaag 400  Q
    |||| |||||||||||||||||| |||||||||||| |  |||||||  |||||||||||    
T  29862870 ggaataagatgggtgttcagaaacaaactagatgaagaaagtaaggtgatcagaaacaag 29862811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 399
Target Start/End: Original strand, 22906787 - 22906856
Alignment:
Q  330 aaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaa 399  Q
    ||||||||||| ||||||||||| | || ||||| || || |||||| | ||||||||| ||||||||||    
T  22906787 aaaccatcattagaacaagatggatttttagaaacaagcttgatgaagaaggtaaggttttcagaaacaa 22906856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 250 - 419
Target Start/End: Original strand, 14119 - 14288
Alignment:
Q  250 atggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaaga 349  Q
    |||||||||||||||||  ||||| |||||||||| ||| || |||||||| |||||||| || ||| |   ||||  ||||||||||||||||||||||    
T  14119 atggattgaagccatgaaggaagaactttctcaatttgaaagaaacaaagtttggaatttagttccaaataatcaaagcaaaaccatcattggaacaaga 14218  T
Q  350 tgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    ||||| |||||||| || || |||||| | |||||||||||||||||||| |||||  |||| |||||||    
T  14219 tgggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaag 14288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 419
Target Start/End: Original strand, 40 - 131
Alignment:
Q  328 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||| | |||||||||||||||||||| |||||  |||| |||||||    
T  40 caaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaag 131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 251 - 419
Target Start/End: Original strand, 2509 - 2677
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| || || ||| ||  |||||||||||||||||||||||||||||    
T  2509 tggattgaggccatgaaagaagaactttctcagtttgaaagaaacaaagtttggaacttagttccaaaaaatcaagacaaaaccatcattggaacaagat 2608  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    |||| |||||||| || || |||||| |   |||||||||||||||||| ||||| |||||||||||||    
T  2609 gggttttcagaaacaagcttgatgaagaatttaaggttgtcagaaacaaagcaaggttagttgctcaag 2677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 251 - 433
Target Start/End: Complemental strand, 16137962 - 16137780
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||||| | |||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  16137962 tggattgaggtcatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 16137863  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  16137862 gggtttttagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 16137780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 433
Target Start/End: Original strand, 6539040 - 6539222
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  6539040 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 6539139  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  6539140 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 6539222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 433
Target Start/End: Complemental strand, 26354077 - 26353895
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  26354077 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 26353978  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  26353977 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 26353895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 433
Target Start/End: Original strand, 32102943 - 32103125
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  32102943 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 32103042  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  32103043 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 32103125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 433
Target Start/End: Original strand, 46501677 - 46501859
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  46501677 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 46501776  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  46501777 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 46501859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 251 - 419
Target Start/End: Complemental strand, 9541018 - 9540850
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| |||||  | || ||| |   | |||||||||||||||||||||||||||    
T  9541018 tggattgaggccatgaaggaagaactttctcagtatgaaagaaacaaagtttggaacctagttccaaataattaagacaaaaccatcattggaacaagat 9540919  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    || | |||||||| ||||| |||||| | ||||||||||||| |||||| ||||| |||||||||||||    
T  9540918 ggattttcagaaacaaacttgatgaagaaggtaaggttgtcaaaaacaaagcaaggttagttgctcaag 9540850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 275 - 433
Target Start/End: Complemental strand, 5387669 - 5387511
Alignment:
Q  275 ctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatg 374  Q
    |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| |||||||||||||||||||||||||| || ||||| || || ||||    
T  5387669 ctttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagatgggtttttagaaacaagcttgatg 5387570  T
Q  375 aaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    || | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  5387569 aagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 5387511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 251 - 433
Target Start/End: Original strand, 8505612 - 8505794
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||| ||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  8505612 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacagagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 8505711  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  8505712 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 8505794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 251 - 433
Target Start/End: Original strand, 44901920 - 44902102
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||| ||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  44901920 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacagagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 44902019  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  44902020 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 44902102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 18663519 - 18663616
Alignment:
Q  322 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    ||||| ||||||||||||||||||||||||| | |||| ||| || || |||||| |  ||||||||||||||||||| ||||| || ||||||||||    
T  18663519 tcaaggcaaaaccatcattggaacaagatggtttttcaaaaacaagcttgatgaagaaagtaaggttgtcagaaacaaagcaaggttggttgctcaag 18663616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 433
Target Start/End: Original strand, 15179736 - 15179836
Alignment:
Q  333 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 432  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  15179736 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 15179835  T
Q  433 a 433  Q
    |    
T  15179836 a 15179836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 433
Target Start/End: Complemental strand, 13756 - 13574
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  13756 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 13657  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  13656 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 13574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 328 - 419
Target Start/End: Original strand, 30523 - 30614
Alignment:
Q  328 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||| | || ||||||||||||||||| ||||| |||||||||||||    
T  30523 caaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagaaggaaaggttgtcagaaacaaagcaaggttagttgctcaag 30614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 328 - 419
Target Start/End: Complemental strand, 84289 - 84198
Alignment:
Q  328 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||| | || ||||||||||||||||| ||||| |||||||||||||    
T  84289 caaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagaaggaaaggttgtcagaaacaaagcaaggttagttgctcaag 84198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 19201 - 19257
Alignment:
Q  320 cctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaa 376  Q
    ||||||||  |||| || ||||||||||||||||| || ||||| ||||||||||||    
T  19201 cctcaagatcaaacaattattggaacaagatgggtctttagaaacaaactagatgaa 19257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 329 - 433
Target Start/End: Complemental strand, 46124 - 46020
Alignment:
Q  329 aaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatc 428  Q
    |||||||||||||||||||||||||| |||||||| || || |||||| |||| || ||||||||||| || ||||| ||||||||||||| ||| || |    
T  46124 aaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagatggcaaagttgtcagaaataaagcaaggttagttgctcaaggttacaacc 46025  T
Q  429 aacaa 433  Q
    |||||    
T  46024 aacaa 46020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0764 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 419
Target Start/End: Complemental strand, 6580 - 6489
Alignment:
Q  328 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||| | |||||||||||||||||||| |||||  |||| |||||||    
T  6580 caaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaag 6489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 433
Target Start/End: Original strand, 19 - 124
Alignment:
Q  328 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataat 427  Q
    ||||||||||||||||||||||||||| ||||  || || || |||||| | |||||||||||||||||||| |||||  |||| ||||||| ||| |||    
T  19 caaaaccatcattggaacaagatgggttttcaagaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaaggttacaat 118  T
Q  428 caacaa 433  Q
    ||||||    
T  119 caacaa 124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 32613 - 32516
Alignment:
Q  322 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 419  Q
    ||||| |||||||||||||||||||||||| || |||||||| ||||  |||||| | ||||||||||||||||  || ||||| |||||||||||||    
T  32613 tcaaggcaaaaccatcattggaacaagatgagttttcagaaacaaacatgatgaagaaggtaaggttgtcagaagaaaagcaaggttagttgctcaag 32516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 399
Target Start/End: Original strand, 153135 - 153283
Alignment:
Q  251 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 350  Q
    |||||||| |||||||  ||||| |||||||||| |||  | |||||||| |||||||| ||  || |   ||||  |||||||||||||||||||||||    
T  153135 tggattgaggccatgaaggaagaactttctcaatttgaacgaaacaaagtttggaatttagttacaaataatcaaagcaaaaccatcattggaacaagat 153234  T
Q  351 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaa 399  Q
    |||| || ||||| || || |||||| | ||||||||| ||||||||||    
T  153235 gggttttaagaaacaagcttgatgaagaaggtaaggttatcagaaacaa 153283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 433
Target Start/End: Complemental strand, 100076 - 99976
Alignment:
Q  333 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 432  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  100076 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 99977  T
Q  433 a 433  Q
    |    
T  99976 a 99976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 433
Target Start/End: Original strand, 261085 - 261180
Alignment:
Q  338 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| || || ||||||||||| ||||  || |||||||||    
T  261085 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaagccagattagttgcacaaggctacaatcaacaa 261180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 433
Target Start/End: Original strand, 263388 - 263483
Alignment:
Q  338 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 433  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| ||  | ||||||||||| ||||  || |||||||||    
T  263388 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaaaccagattagttgcacaaggctacaatcaacaa 263483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 433
Target Start/End: Original strand, 6894 - 6994
Alignment:
Q  333 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 432  Q
    |||||||||||||||||||| | || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  6894 ccatcattggaacaagatggatatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 6993  T
Q  433 a 433  Q
    |    
T  6994 a 6994  T

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Target: scaffold0021 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 167490 - 167546
Alignment:
Q  320 cctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaa 376  Q
    ||||||||  |||| |||||||||||||||||||| || ||||| ||||||||||||    
T  167490 cctcaagatcaaacaatcattggaacaagatgggtttttagaaacaaactagatgaa 167546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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