View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18821_low_3 (Length: 227)
Name: NF18821_low_3
Description: NF18821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18821_low_3 |
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| [»] scaffold0576 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: scaffold0576 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 8258 - 8381
Alignment:
| Q |
104 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8258 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
8357 |
T |
|
| Q |
204 |
aagtttcctcaattctaatgatga |
227 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
8358 |
aagtttcctcaattctaatgatga |
8381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 8121 - 8247
Alignment:
| Q |
1 |
taataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtc |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8121 |
taataattctaaacaatgacacattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtc |
8220 |
T |
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| Q |
101 |
tgcatgtctactgctgagaagaaattt |
127 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
8221 |
tgcatgtctactgctgagaagaaattt |
8247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 15363487 - 15363610
Alignment:
| Q |
104 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15363487 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
15363586 |
T |
|
| Q |
204 |
aagtttcctcaattctaatgatga |
227 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
15363587 |
aagtttcctcaattctaatgatga |
15363610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 15363350 - 15363476
Alignment:
| Q |
1 |
taataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15363350 |
taataattctaaacaatgacacattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtc |
15363449 |
T |
|
| Q |
101 |
tgcatgtctactgctgagaagaaattt |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
15363450 |
tgcatgtctactgctgagaagaaattt |
15363476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 7406082 - 7405959
Alignment:
| Q |
104 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7406082 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
7405983 |
T |
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| Q |
204 |
aagtttcctcaattctaatgatga |
227 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
7405982 |
aagtttcctcaattctaatgatga |
7405959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 7406219 - 7406093
Alignment:
| Q |
1 |
taataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7406219 |
taataattctaaacaatgacacattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtc |
7406120 |
T |
|
| Q |
101 |
tgcatgtctactgctgagaagaaattt |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
7406119 |
tgcatgtctactgctgagaagaaattt |
7406093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 1655899 - 1656005
Alignment:
| Q |
1 |
taataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtc |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1655899 |
taataattctaaataatgacacattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtc |
1655998 |
T |
|
| Q |
101 |
tgcatgt |
107 |
Q |
| |
|
||||||| |
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|
| T |
1655999 |
tgcatgt |
1656005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 4683892 - 4683769
Alignment:
| Q |
104 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
203 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4683892 |
atgtctattgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
4683793 |
T |
|
| Q |
204 |
aagtttcctcaattctaatgatga |
227 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4683792 |
aagtttcctcaattctaatgatga |
4683769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 4684702 - 4684596
Alignment:
| Q |
1 |
taataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4684702 |
taataattctaaacaatgacacattagaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtc |
4684603 |
T |
|
| Q |
101 |
tgcatgt |
107 |
Q |
| |
|
||||||| |
|
|
| T |
4684602 |
tgcatgt |
4684596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 24712108 - 24712070
Alignment:
| Q |
168 |
atatctcagcatctaccattccaagagtaacaccacaag |
206 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
24712108 |
atatttcagcatctaccattctaagagtaacaccacaag |
24712070 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 25639937 - 25640053
Alignment:
| Q |
104 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25639937 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatatatatctcagcatctaccattccaagagcaacaccac |
25640036 |
T |
|
| Q |
204 |
aagtttcctcaattcta |
220 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
25640037 |
aagtttcctcaattcta |
25640053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 17303704 - 17303810
Alignment:
| Q |
1 |
taataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17303704 |
taataattctaaacaatgacacattacaatgccaaaggacacctattttccagaataagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtc |
17303803 |
T |
|
| Q |
101 |
tgcatgt |
107 |
Q |
| |
|
||||||| |
|
|
| T |
17303804 |
tgcatgt |
17303810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 17253349 - 17253447
Alignment:
| Q |
7 |
ttctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatg |
106 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |
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|
| T |
17253349 |
ttctaaacattggcacatcacaatgtcaaaggacacctatt--ccagaacaagtacattcaaggcaagaaaatgaccagtgaaatccaagggtctgcatg |
17253446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 17242420 - 17242471
Alignment:
| Q |
53 |
gaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
17242420 |
gaacaagtacattcaaggcaagaaaatgaccggtgaaatccaagggtctgca |
17242471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 31341197 - 31341091
Alignment:
| Q |
1 |
taataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31341197 |
taataattctaaacaatgacacattacaatgccaaaggacacctattttccagaacaagtgcattcaaggcaagaaaatgaaccgtaaaatccaagggtc |
31341098 |
T |
|
| Q |
101 |
tgcatgt |
107 |
Q |
| |
|
|||||| |
|
|
| T |
31341097 |
cgcatgt |
31341091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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